Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03034 ATGGGGCAAAAAAAGCGAAACAGTACTCCACGCTCCAAATCATCGCTGGCGTCGACACAAGCGACCGCCGTCGCCACCACAGTTTCGGCGGAAGGGGAGTCAAACACGGTTGCAGATCAAAGTCCCGATAAGAACGAATTCACGACTCCTCAATCTGCTTTTCCGTCTCACTCAGCAATCAAGGAGGAATGCGAGCGAGCCCTAACGGCGCTCCGGCGCGGCAACCACACAAGGGCGCTGAAACTAATGAAGGATTGCTGCTCCCGCCATGAGAACTCGCCTCACTCGGCGTTCGTCCACCGAGTCCACGGCACTGTGTGGGTGAAAGTTGCGGCGGTTATGGACGACCCGAGCGCGAAGCAGAGGCACTTGAAAAACGCTGTCGAGTGCGGCAGAAAAGCCGTTGAACTCTCCCCAAATTCGATCGAGTTTGCGCACTTTCATGCGAGCGCGCTGTTCGACACGGCGAACGAAGGTAAAGAGTTCGAGGAAGTGGTGCACGAGTGCGAGAGGGCACTCGCGGTTGAAAAACCCAACGACCCTGCGAAGGAGAGCTTACAGGACGAGAGCCAGCAGAAGATACCGACGGCGGAGGCACGTGTGTTGCACGTGCAGAACGAGCTCCGACAACTGATTCAGAAGGCCAACATTGCTTCCTTGTCAAGCTGGATGAAGCACTTGGGCAATGGGGAGGAGAAGTTTCGGTTGATTCCCATACGGAGGCCCACCGAGGACCCAATGGAAGTGAGGGTAGTTCAGTCCAGAAGGTCCAATGAGATCAAGAAGGTGACCAAGACGCCTGAAGAGAGGAGGAAAGAAATCGAAGTTCGAGTTGCAGCTGCGAGGTTGTTGCAACACAAGTCAGAGTCACAGCAATCTCAGAGTGAAGGAGATAGGGATGAGAGGACGTCTTCTTCTGGTCATAGAAGGAAGAATGGACATGCCAGAAAGAATGGAACTTCGGGTTTAGTACAGTCATATTGGGATTCGATGAGTTTGGATATGAAGAAAGGCTTGCTTAGGATTAGAGTTTGTGATCTCAAGTCACACTTTGGGTCTTTGAAGGATACTTTGCCAAACGAGGTTTTATCAGAGGCTTTGTCCTATGCCGAGGTTAATAAAACGTGGAAGTTCTGGCTTTGCTGCCGTTGTGATGAGAAATTTCCAAATTCAGAGTCTTTCGGGGAGCACGTTGTGCAGGAACACATGGGGAACCTATTGCCGAGAATGCAGAGGCTTTTGCCCCAGAATATTGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTCTGGACGTCTCTGCAGCTGTTAAAATGCTTGAAAATAAAGCAAAATTCAGAGATTCTTTATTCCCCAGGTATTCCTACTTGGGTCATTATGGAGAGGAGTACATGGATTACTTTAAAGACACAATCTATTCTTGCCATGATAATGGGAGTACAGGGTATAGTCTTCATAATTGTACAACTGGAAGCAGTAAATATTGTAAAATTGCAGAAAGTGATATTAGAGGTGGAGTTGAAGTCCAAGGATCTACATTATGTCCCCTTGCTGATAGTTGGCCAATATCTGATGACTCTGAGCGTGCAAAACTTCTAGGGAAAATTCGTGCAGTATTTGAGATGCTTATTAGACACAAATATCTTGCTGCTAATCATCTAAACAAGGTCATACAATTTACTATGGATGAGATACAGGGCCTTCTTGGCGGTTCTCAACTCCTAAACCATGGTGTGGACCAAACACCAATGTGCATGTGCTTTCTGGGAGCTGCTCAGCTTAGGAAAATTCTCCAATTTTTGCAGGAGTTATCTCATGCTTGTGGTTTGGGTAGATATACTGACAAAACTAGTAGTCCCATGGATGATTTGCACAATATCAGTCAAGTTCCTGATATCAAAGAGAGGATTGTTCTTAATGGAGATGCATCATGCCTCCTTCTAGATGAGTGTTTACTGCCTACACAAGTCACTCCTGGTACAGCTCAGGGGGTTGTATTGGATGATGCAACTGCCCCAACTTCTCCTGATGGGGTTTCACACAATACCGATGCTTTGCTATACTGGATATTTTCCGGTTCACCTAGTGGGGATCAATTAACCTCATGGATGCGTACAAAAGAAGATAAAAGATGTCAAGGAATAGAAATTGTCCAGAAGCTCGAGAAGGAGTTTTATCACCTACAGGGTCTCTGTGAAAAGAAGTGTGATCGTGTAAGTTATGAGGAAGCTCTGCAGGAAGTAGAGGATATTTGTCTCCAAGAAGGTAAGAAGATGGAAAATGTTGGTGAATTTGTCCAGCAAAGCTATGAGTCTGTCTTAAGAAAGAGGAGAGATGAGCTCATTGAGAATGAAAATGATGTGATGTATGTTAGCAATAGGTTTGAGTTAGATGCTATTTCAAATGTTTTGCAAGAAGCAGAAGCAATTAATGTTAGTCAATTTGGTTATGAGGAAACTTATGCTGGTGTGACTTCTCAGCTATGTGATTTGGAATCTGGTGAAGATGAATGGAGAATGAAAGAATATTTACATCAAATGGATGGCTGTATAGAAATTGCTATTCAGAAACTGAAGGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCACAAATCATGAGAAATGTTACAGAAATGCAGCAATTGGAACTCAAACTTGGGCCTAGTTCTGCTTATGATTATCGAGTGATATTATTGCCTCTAGTGAAGTCTTACCTAAGGGCTCTTCTGGAAGATATGGCTGAGAAAGATGCAACAGAGAAGTCTGATGCTGCAAGAGAAGCATTGTTGGCTGAACTCGACCACGATTCTAAGAAGATTGTTAAAGGGGGAAGCGAGAACGCAAGACATATGGAGAAGACAAAAGATAAAAAGAAGAATAAAGATCATAGAAAAACAAAAGATTTAAATGTGATCATCTCGCACATTGAATTCATTCATATTGGGCTATATTCCATTTCCTATCCAGTTTCACCTGATAGCAACTATCAAGATTCTGAGGTGGTTGTTTCTATGAATGGTGATAACTTTGATCAACAGGAAGAGGAATTTAGACGTAAAATTGAACTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGGAGGATAGAAAATGAAGCTAAACAGAAGCTCCTTGCTGAACTACAAAAGAAATCATCTGGGACATATTTAGAGAAAGCAGCAGACAGGCCTCAGGATTATCAATTGAAGGTGGTTTCTGGTGGCCCAGATGTACATGAACATATAAGAGCACCTATACAGGTACAATTGGCAGAGGAGAATGGGTACCCAGGCAATCTGGATGGTGTGCTTATTACCAAAACAAATGGTTCAATGGGGCCAATTAAATCTTCAGCTGATTCAGCTGCCCAAAAGATTCACTATATGCATCATTCAAAAGCTAAACAAGATCTGGCTAATGGAATAGTTGCAGAGAACGGTTTTCAATTGCCTGATCGGCGCTCAGGAAAAAAACATAAGCAGCATAAGAATCCTTCCAGATTGGTTGATGGAAAGTTTGAACCTTTTGCGTTGGAAAAACAGAATGAGGTTACACATAATGACAATCACTTAAGACAGCAGATTAAAGTCGATTACAACCAAGAGGCTAACAATGATTGGGGGGACAATGGATCAAAGAAGGTGAAAGTGTTGCCAGTTGAAGATGATGAGGAGGAAAGATTCCAAGCTGATCTTAAAAAAGCTGTATGCCAAAGTCTAGACATGCATCAAGCACATAGGGAAGTGCCTTCAGTTTCCAGTTTGAGAACGTCTCAGAGAGCTTCTTCAGAAGTAGATAGAGTGGGCTTTCCAGTGGAGGAAGAAACAACTGAGAATGTAAATGGAACTACTCTGATTGGTACTGGGCTAAAAAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCACTGTGGCATTTAAGACACTTTCGGGAGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAGTCCTTGTGTTGTCTGTGCATTGTATGACATCTTTACTGCCATGGATGTTGCATCAAAGGATTCCAGGACAGAAGCAGTAGCACCTACCTCCCTGAGGATAGCTCTTAGCAATCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTAGCAGTGATATTTGACTGCCTCCATCGATCATTCACTTGTGGTTCAAGTGTTTCTGATTCAGAATCAGTAGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAACAGTACTTGTATAGTACATTCAGTTTTTGGAATGGACATTTTTGAACGAATGAACTGCTATCACTGTGGTCTTGAGTCAAGGCACTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTTCGGACAATGAAGGTTATGTGCCCTGAAAGCTCCTTTGATGAGCTTTTGAATCTTGTGGAGATGAATGATCAGTTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAACTCCACCACATGTTTTCATGACAGCTCCTATATGTTTGGAATTTACAGTTCTTGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACTGCAACTGTTGAAGCCCTGAGCACTGAGATGGATATCAGTATCCTCTATCGTGGTTTAGATCCTAAAAGCACCCATAGCTTGGTTTCAGTGGTTTGCTACTATGGGCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGATAATTGGTGGATGGGCTGATGTTCTTAAAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4914 0.429 MGQKKRNSTPRSKSSLASTQATAVATTVSAEGESNTVADQSPDKNEFTTPQSAFPSHSAIKEECERALTALRRGNHTRALKLMKDCCSRHENSPHSAFVHRVHGTVWVKVAAVMDDPSAKQRHLKNAVECGRKAVELSPNSIEFAHFHASALFDTANEGKEFEEVVHECERALAVEKPNDPAKESLQDESQQKIPTAEARVLHVQNELRQLIQKANIASLSSWMKHLGNGEEKFRLIPIRRPTEDPMEVRVVQSRRSNEIKKVTKTPEERRKEIEVRVAAARLLQHKSESQQSQSEGDRDERTSSSGHRRKNGHARKNGTSGLVQSYWDSMSLDMKKGLLRIRVCDLKSHFGSLKDTLPNEVLSEALSYAEVNKTWKFWLCCRCDEKFPNSESFGEHVVQEHMGNLLPRMQRLLPQNIDNEWIEMILNCSWKPLDVSAAVKMLENKAKFRDSLFPRYSYLGHYGEEYMDYFKDTIYSCHDNGSTGYSLHNCTTGSSKYCKIAESDIRGGVEVQGSTLCPLADSWPISDDSERAKLLGKIRAVFEMLIRHKYLAANHLNKVIQFTMDEIQGLLGGSQLLNHGVDQTPMCMCFLGAAQLRKILQFLQELSHACGLGRYTDKTSSPMDDLHNISQVPDIKERIVLNGDASCLLLDECLLPTQVTPGTAQGVVLDDATAPTSPDGVSHNTDALLYWIFSGSPSGDQLTSWMRTKEDKRCQGIEIVQKLEKEFYHLQGLCEKKCDRVSYEEALQEVEDICLQEGKKMENVGEFVQQSYESVLRKRRDELIENENDVMYVSNRFELDAISNVLQEAEAINVSQFGYEETYAGVTSQLCDLESGEDEWRMKEYLHQMDGCIEIAIQKLKEHLSIELSKIDAQIMRNVTEMQQLELKLGPSSAYDYRVILLPLVKSYLRALLEDMAEKDATEKSDAAREALLAELDHDSKKIVKGGSENARHMEKTKDKKKNKDHRKTKDLNVIISHIEFIHIGLYSISYPVSPDSNYQDSEVVVSMNGDNFDQQEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQKLLAELQKKSSGTYLEKAADRPQDYQLKVVSGGPDVHEHIRAPIQVQLAEENGYPGNLDGVLITKTNGSMGPIKSSADSAAQKIHYMHHSKAKQDLANGIVAENGFQLPDRRSGKKHKQHKNPSRLVDGKFEPFALEKQNEVTHNDNHLRQQIKVDYNQEANNDWGDNGSKKVKVLPVEDDEEERFQADLKKAVCQSLDMHQAHREVPSVSSLRTSQRASSEVDRVGFPVEEETTENVNGTTLIGTGLKNEVGEYNCFLNVIIQSLWHLRHFREEFLGRSRSEHDHVGSPCVVCALYDIFTAMDVASKDSRTEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTCGSSVSDSESVESNCMGSWDCANSTCIVHSVFGMDIFERMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCPESSFDELLNLVEMNDQLACDPEVGGCGKLNHIHHFLSTPPHVFMTAPICLEFTVLGWQNTCESADDITATVEALSTEMDISILYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWADVLKMCERGHLQPQVLFFEAVN. 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03034 1637 MobiDBLite consensus disorder prediction 1256 1275 - -
Seca3g03034 1637 Coils Coil 1017 1051 - -
Seca3g03034 1637 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1296 1636 IPR028889 -
Seca3g03034 1637 Pfam Protein of unknown function (DUF629) 324 855 IPR006865 -
Seca3g03034 1637 Pfam Ubiquitin carboxyl-terminal hydrolase 1297 1612 IPR001394 GO:0004843|GO:0016579
Seca3g03034 1637 Pfam Protein of unknown function (DUF627) 66 176 IPR006866 -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 285 321 - -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 945 959 - -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 1 56 - -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 292 308 - -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 1258 1272 - -
Seca3g03034 1637 ProSitePatterns Zinc finger C2H2 type domain signature. 381 402 IPR013087 -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 1 58 - -
Seca3g03034 1637 Gene3D Cysteine proteinases 1279 1635 - -
Seca3g03034 1637 Gene3D Tetratricopeptide repeat domain 52 218 IPR011990 GO:0005515
Seca3g03034 1637 CDD Peptidase_C19 1387 1634 - -
Seca3g03034 1637 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1636 - -
Seca3g03034 1637 SUPERFAMILY Cysteine proteinases 1296 1634 IPR038765 -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 945 970 - -
Seca3g03034 1637 MobiDBLite consensus disorder prediction 1156 1176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03034 Seca-Chr3 54322684 54333144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03034 55 1634 C2H2 Transcription Factor Family AT3G47890 55.576 0.0 1662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03034 - - adu:107493676 2262.65