Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03030 ATGCCATATGATAGGAGAGGGATGGAGTGGCTCTTCAATCGTTGGACGGGCGTGGCCGCAGCCATATGGATCCAATGGAGCTGCGGTGCATCATACACCTTCAGCATCTACTCCCCCGTCCTCAAGTCCACCCAGGGCTACGACCAATCCACCCTCGACACCGTCTCTGTCTTCAAGGACATTGGCGCCAACTTCGGCGTCCTCTCCGGCCTTCTCTACTCCGCCGTTACCCCCTACTCCGACCACCAACGCCGCCGTCCCAAGTCCATATGGTCCTCCCTCGCCGGCCCCTGGGTTGTCGTCGCCGCCGGAGCCCTCCAGTGCTTCGCCGGCTTCATCTTCATTTGGGCCTCCGTCGTCGGCTTAATCAACCCACCTCCCGTTCCCGTCATGTGCTTCTTCGCTTGGCTCGCCTCTAATGGCCAAACCTTCTTGAACACCACCAACGTCGTCACCGGCTTGCGCAATTTCCCTGCATATAGCGGCACCATCATCGGCATCATGAAGGGATTTCTTGGGCTCAGTGGAGCTATCTTGATCCAATTGTATCACACGTTTTGCGATGGGGACCCTACTACCTATCTTCTGATGCTTGCTTGCCTTCCTGCTTTTATCTGCGTTTTGCTTATGTTTCTTTTGAGGATCTACGAAGCGCACGAGGGTGATTACAAGAAGCATTTGGATGGTTTCTCTGTGGTCACTGTGATTATTGTTGCCTATCTCATGTTCATAATCATTTTACAGAATTTCGTGAGCTTACCCTATTGGGGACGGATTTTGGCGTGTGTGATTCTTGTGGTTCTCCTAGCATCGCCTTTTGGGATTGCTGCCAAAGCTCACTGCGAGGAGTCAAGGAAATTTGCACAAACCCCCCCTTCAATGGAATACAGAGAGCTTCCTGGTGACGAGGGGCAGGTACAGGTTACTTCGGATGATAAAGGGTTGCCATGTGAAGAAGAAAAGAACCTCTTGCAAGCTATGTGTACGGTTGAATTTTGGATGTTGTTTGTTACCATGATATCTGGGTTGGGTTCTGGGTTGGCAACTATAAATAATATGAGCCAAATAGGGCAATCTCTTGGGTATAGTACTATTGAGATTAATAATTTGGTGTCATTGTGGAGTATGTGGAATTTCCTTGGCCGTTTTGGAGGTGGACATTTATCAGATTATATAATGCACAAAAAAGGTTGGCCGAGGCCCCTCTTGATGACCCTGACTCTGGGGATAATGATTCTTGGTCATGTAATTATAGCTTCTGGTTTCAGTGGAAATTTGTATTTGGGTCCTGTTTTGGTGGGCATCTGCTATGGTGCACATTGGTCCTTGATGCCTACAATCACTTCTGAGATATTTGGTGTGAAACATATGGGTACCATTTTCAACACTATTGCTGCAGCTAGTCCACTTGGGTCTTATATACTTTCTGTGAGAGTTGTGGGATATATTTATGATAAGGAAGCCATTGAAGATGATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCGTTTCTGATCTTGGCTGGTGTGGCTTTTCTTGCATTTTTGGTTGGTCTGGCATTGTACTTCCGGACCCAAAAGTTCTATAAGCTAGTTGTGCTTAGAAGATTAAAGCATTATGCACGATGA 1632 0.4773 MPYDRRGMEWLFNRWTGVAAAIWIQWSCGASYTFSIYSPVLKSTQGYDQSTLDTVSVFKDIGANFGVLSGLLYSAVTPYSDHQRRRPKSIWSSLAGPWVVVAAGALQCFAGFIFIWASVVGLINPPPVPVMCFFAWLASNGQTFLNTTNVVTGLRNFPAYSGTIIGIMKGFLGLSGAILIQLYHTFCDGDPTTYLLMLACLPAFICVLLMFLLRIYEAHEGDYKKHLDGFSVVTVIIVAYLMFIIILQNFVSLPYWGRILACVILVVLLASPFGIAAKAHCEESRKFAQTPPSMEYRELPGDEGQVQVTSDDKGLPCEEEKNLLQAMCTVEFWMLFVTMISGLGSGLATINNMSQIGQSLGYSTIEINNLVSLWSMWNFLGRFGGGHLSDYIMHKKGWPRPLLMTLTLGIMILGHVIIASGFSGNLYLGPVLVGICYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPLGSYILSVRVVGYIYDKEAIEDDNSCFGIHCFMLSFLILAGVAFLAFLVGLALYFRTQKFYKLVVLRRLKHYAR. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03030 543 CDD MFS_Mch1p_like 14 515 - -
Seca3g03030 543 SUPERFAMILY MFS general substrate transporter 239 528 IPR036259 -
Seca3g03030 543 Pfam Major Facilitator Superfamily 335 528 IPR011701 GO:0022857|GO:0055085
Seca3g03030 543 ProSiteProfiles Major facilitator superfamily (MFS) profile. 330 543 IPR020846 GO:0022857
Seca3g03030 543 SUPERFAMILY MFS general substrate transporter 10 215 IPR036259 -
Seca3g03030 543 Gene3D MFS general substrate transporter like domains 324 532 IPR036259 -
Seca3g03030 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 531 - -
Seca3g03030 543 Pfam Nodulin-like 14 76 IPR010658 -
Seca3g03030 543 Pfam Nodulin-like 94 275 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03030 Seca-Chr3 54288147 54289942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03030 8 540 Nodulin-like Gene Family AT1G74780 57.778 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03030 - - gmx:100775628 917.146