Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03025 ATGTCACAAGGATCTCCCCCTCCTCCGCCACCAGCAACCACCGAACCCTGCAACCCACCCTCGCCGGAAAAGGAGGAAACCACCACTAACGCTGCTCCTCCTCCGGCCGGCACCAGGAACCGCCCCTCCCGCGCCTGCACCATTCGCGCCGCGGCGCGCCTCTATTCGACTTCGCAGCCGGCGATCGAGCGCAAGCCCAAGGCCGCGGCGGCGAAGAAGGAGAAGCGCCGCGAGGACTCGCCGCCGCCGTCGCCGTCACCGCAGCAGCAATGCAGCAAGATCGTGACGACACTGGTGGAAGCGCCCCCGGCCTCGCAGTTGCCACGGTGGAACCTCCGCTCCATGTGGGAGTTAGCTTCCATACTCAATTTCTTGCATCTATTTAGGCCTCTTTTGAATATATCAGTAGAATTCTCGGCTGAAGAGTTCGAAACAGCTCTTCTTACCCCCAATGACACATTGGGTGATATACATATGCCTTTACTAAAGGCAATCCCTCCCATTACAAGGATGGCACTCTCACGTGATACTTGGATTACTGTATTATGCAGAAAATTGAGAGATTGGTGGCACTGGGTTGCTGATGGGGATCTTCCCATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCGCTTGATCCAGGAGTCCGTGTCATTATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGAAGTTACATTGACAACTCACTCAAACAAGGTGTTCAACTTTCAACATTCCGTAAGGAGCGAATTGGTGGTGATTCACATGGAGTTTCTTTTTGGTATGAAGATGACCCAATTATTGGTCATAGATTGTATCGGGAAATAAGGAAAACTGAAGTGGTTCAAGTGAAGAAAGGGAAACCAAGGGGTTCCCAGGTTCTTTCTAATACAACATACCAATGGGAAACCGTTGCTACCAATTTTGATGAATTTCAAGATGTTTCTGAGAAGCTTCTCTCAAGTAAAAACAGAATGGAGGCTTCTGTGGGGAAAAAGTTGAAGATAGACATGCTTCCTGAAATTGAGAAGGTTCACAAGAGAAAGGAGAGGTTAATGAAGAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTGGGTGTTGATGGGCTTGCTGCAGGGCGTTCACTTCGTGATAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCCATCAATGAGGCTATTAAGATAACCAAACAGAAACCACCATCCCCAGAACGTATACCCAGGAGAGAAGCAGGGACAAAACCTGAAGCTTTAACTAATGGTAAATTGAGCGGTCCTTCACATGACAGTCAACATCTGAATTTCAGTATGCCATCTCCAAAATCACCTGACTTTGATGATGTGGAGGAAGAAAATCAAACTGACCCATTGGATCGAAGCAATCGGCAAAGACGGAGGCCTACACGGTATTCAGAGAAAGAGTTTGTTGAAGCAGTGTCAGATAATGAAGCCGACTTTGACAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGAAGAATATCTCCGGAAACGTAAGCAGAGGAAGGTATCCAGTAGCTCTGCCTCTGAAGGAGATGAAGAATATCATTGGGATGAAGATAATGTTGAAGATGAAGACGAAGAAGATGAAGATTCCTTAAGTGTCAGTGAGGATAGTGACAAGCCCCGTAAATTCAAGCAATTGCCAGGCCGGACTAGGAGGGAAACTAAACTCAGGTCTGTGGGTGATATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACTAGAAACCGCATAAATTACCAACAGTATGAGATCTCTGAGTCAGAAACAGAGTTAACTAAACCTGAGAAATCTAATGCATCAGATGACCGTTCAGATCCAAGTGAGAATGGGGAATTTATGATGGAAAGTGAAGATTCAGATGACAATGATGGTGAAGATCAGGAAATGAAAGTCGAGGAGCCAGTTACTTACGCAGCAGTAGAAGAGAATGAATATCCTGCTGCAGAAGAGAATGAACAAAACCAGGACCAGCCTCCTGAAAAATCAAGTAGTCCAGTTCAGGAGGAGAAATCAAGTAGTCCGGGTCAGGAGGAAGCTGAGGGCGTGACAAAAAGACATTTCCTTGATTTGAATGAGGTTGCCCCTAGCTCAGGTTTTGATGATGGTCCAAATACATCAACGAAAGATGAAGGCAACAATGATGATTTCTGA 2220 0.4595 MSQGSPPPPPPATTEPCNPPSPEKEETTTNAAPPPAGTRNRPSRACTIRAAARLYSTSQPAIERKPKAAAAKKEKRREDSPPPSPSPQQQCSKIVTTLVEAPPASQLPRWNLRSMWELASILNFLHLFRPLLNISVEFSAEEFETALLTPNDTLGDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVIILKALCDIRVEQEDIRSYIDNSLKQGVQLSTFRKERIGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQVKKGKPRGSQVLSNTTYQWETVATNFDEFQDVSEKLLSSKNRMEASVGKKLKIDMLPEIEKVHKRKERLMKKQHRQALLLDNFLGVDGLAAGRSLRDRKPVTYTFDDYDRSINEAIKITKQKPPSPERIPRREAGTKPEALTNGKLSGPSHDSQHLNFSMPSPKSPDFDDVEEENQTDPLDRSNRQRRRPTRYSEKEFVEAVSDNEADFDSDDDIVGEAVYDEEYLRKRKQRKVSSSSASEGDEEYHWDEDNVEDEDEEDEDSLSVSEDSDKPRKFKQLPGRTRRETKLRSVGDIQSGLRRSKRATRNRINYQQYEISESETELTKPEKSNASDDRSDPSENGEFMMESEDSDDNDGEDQEMKVEEPVTYAAVEENEYPAAEENEQNQDQPPEKSSSPVQEEKSSSPGQEEAEGVTKRHFLDLNEVAPSSGFDDGPNTSTKDEGNNDDF. 740
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03025 739 MobiDBLite consensus disorder prediction 467 493 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 494 509 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 557 581 - -
Seca3g03025 739 PANTHER REMODELING AND SPACING FACTOR 1 67 701 IPR028938 GO:0006355|GO:0031213
Seca3g03025 739 MobiDBLite consensus disorder prediction 510 533 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 611 633 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 405 739 - -
Seca3g03025 739 Pfam DDT domain 120 165 IPR018501 -
Seca3g03025 739 MobiDBLite consensus disorder prediction 696 710 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 673 695 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 66 81 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 436 451 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 534 556 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 1 92 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 20 36 - -
Seca3g03025 739 MobiDBLite consensus disorder prediction 634 651 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g03025 Seca-Chr3 54233409 54241905 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca3g03025 DDT 5.4e-05 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03025 - - gmx:100796430 1081.63