LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g03025	ATGTCACAAGGATCTCCCCCTCCTCCGCCACCAGCAACCACCGAACCCTGCAACCCACCCTCGCCGGAAAAGGAGGAAACCACCACTAACGCTGCTCCTCCTCCGGCCGGCACCAGGAACCGCCCCTCCCGCGCCTGCACCATTCGCGCCGCGGCGCGCCTCTATTCGACTTCGCAGCCGGCGATCGAGCGCAAGCCCAAGGCCGCGGCGGCGAAGAAGGAGAAGCGCCGCGAGGACTCGCCGCCGCCGTCGCCGTCACCGCAGCAGCAATGCAGCAAGATCGTGACGACACTGGTGGAAGCGCCCCCGGCCTCGCAGTTGCCACGGTGGAACCTCCGCTCCATGTGGGAGTTAGCTTCCATACTCAATTTCTTGCATCTATTTAGGCCTCTTTTGAATATATCAGTAGAATTCTCGGCTGAAGAGTTCGAAACAGCTCTTCTTACCCCCAATGACACATTGGGTGATATACATATGCCTTTACTAAAGGCAATCCCTCCCATTACAAGGATGGCACTCTCACGTGATACTTGGATTACTGTATTATGCAGAAAATTGAGAGATTGGTGGCACTGGGTTGCTGATGGGGATCTTCCCATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAATCGCTTGATCCAGGAGTCCGTGTCATTATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGAAGTTACATTGACAACTCACTCAAACAAGGTGTTCAACTTTCAACATTCCGTAAGGAGCGAATTGGTGGTGATTCACATGGAGTTTCTTTTTGGTATGAAGATGACCCAATTATTGGTCATAGATTGTATCGGGAAATAAGGAAAACTGAAGTGGTTCAAGTGAAGAAAGGGAAACCAAGGGGTTCCCAGGTTCTTTCTAATACAACATACCAATGGGAAACCGTTGCTACCAATTTTGATGAATTTCAAGATGTTTCTGAGAAGCTTCTCTCAAGTAAAAACAGAATGGAGGCTTCTGTGGGGAAAAAGTTGAAGATAGACATGCTTCCTGAAATTGAGAAGGTTCACAAGAGAAAGGAGAGGTTAATGAAGAAACAACACAGACAAGCTCTTCTTCTTGATAATTTCTTGGGTGTTGATGGGCTTGCTGCAGGGCGTTCACTTCGTGATAGGAAACCTGTTACCTACACTTTTGATGATTATGATCGGTCCATCAATGAGGCTATTAAGATAACCAAACAGAAACCACCATCCCCAGAACGTATACCCAGGAGAGAAGCAGGGACAAAACCTGAAGCTTTAACTAATGGTAAATTGAGCGGTCCTTCACATGACAGTCAACATCTGAATTTCAGTATGCCATCTCCAAAATCACCTGACTTTGATGATGTGGAGGAAGAAAATCAAACTGACCCATTGGATCGAAGCAATCGGCAAAGACGGAGGCCTACACGGTATTCAGAGAAAGAGTTTGTTGAAGCAGTGTCAGATAATGAAGCCGACTTTGACAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGAAGAATATCTCCGGAAACGTAAGCAGAGGAAGGTATCCAGTAGCTCTGCCTCTGAAGGAGATGAAGAATATCATTGGGATGAAGATAATGTTGAAGATGAAGACGAAGAAGATGAAGATTCCTTAAGTGTCAGTGAGGATAGTGACAAGCCCCGTAAATTCAAGCAATTGCCAGGCCGGACTAGGAGGGAAACTAAACTCAGGTCTGTGGGTGATATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACTAGAAACCGCATAAATTACCAACAGTATGAGATCTCTGAGTCAGAAACAGAGTTAACTAAACCTGAGAAATCTAATGCATCAGATGACCGTTCAGATCCAAGTGAGAATGGGGAATTTATGATGGAAAGTGAAGATTCAGATGACAATGATGGTGAAGATCAGGAAATGAAAGTCGAGGAGCCAGTTACTTACGCAGCAGTAGAAGAGAATGAATATCCTGCTGCAGAAGAGAATGAACAAAACCAGGACCAGCCTCCTGAAAAATCAAGTAGTCCAGTTCAGGAGGAGAAATCAAGTAGTCCGGGTCAGGAGGAAGCTGAGGGCGTGACAAAAAGACATTTCCTTGATTTGAATGAGGTTGCCCCTAGCTCAGGTTTTGATGATGGTCCAAATACATCAACGAAAGATGAAGGCAACAATGATGATTTCTGA	2220	0.4595	MSQGSPPPPPPATTEPCNPPSPEKEETTTNAAPPPAGTRNRPSRACTIRAAARLYSTSQPAIERKPKAAAAKKEKRREDSPPPSPSPQQQCSKIVTTLVEAPPASQLPRWNLRSMWELASILNFLHLFRPLLNISVEFSAEEFETALLTPNDTLGDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVIILKALCDIRVEQEDIRSYIDNSLKQGVQLSTFRKERIGGDSHGVSFWYEDDPIIGHRLYREIRKTEVVQVKKGKPRGSQVLSNTTYQWETVATNFDEFQDVSEKLLSSKNRMEASVGKKLKIDMLPEIEKVHKRKERLMKKQHRQALLLDNFLGVDGLAAGRSLRDRKPVTYTFDDYDRSINEAIKITKQKPPSPERIPRREAGTKPEALTNGKLSGPSHDSQHLNFSMPSPKSPDFDDVEEENQTDPLDRSNRQRRRPTRYSEKEFVEAVSDNEADFDSDDDIVGEAVYDEEYLRKRKQRKVSSSSASEGDEEYHWDEDNVEDEDEEDEDSLSVSEDSDKPRKFKQLPGRTRRETKLRSVGDIQSGLRRSKRATRNRINYQQYEISESETELTKPEKSNASDDRSDPSENGEFMMESEDSDDNDGEDQEMKVEEPVTYAAVEENEYPAAEENEQNQDQPPEKSSSPVQEEKSSSPGQEEAEGVTKRHFLDLNEVAPSSGFDDGPNTSTKDEGNNDDF.	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	467	493	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	494	509	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	557	581	-	-
	Seca3g03025	739	PANTHER	REMODELING AND SPACING FACTOR 1	67	701	IPR028938	GO:0006355\|GO:0031213
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	510	533	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	611	633	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	405	739	-	-
	Seca3g03025	739	Pfam	DDT domain	120	165	IPR018501	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	696	710	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	1	18	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	673	695	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	66	81	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	436	451	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	534	556	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	1	92	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	20	36	-	-
	Seca3g03025	739	MobiDBLite	consensus disorder prediction	634	651	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g03025	Seca-Chr3	54233409	54241905	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Seca3g03025		DDT	5.4e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g03025	-		-	gmx:100796430	1081.63