Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03023 ATGGTGAGGTCTCCATGCTGTGAAAAAATCAGTGTCAAAAGGGGTACAAGTTCTGCAGAAGAAGATGCAAAGATACTTGCATTTGTTTCTAAGCATGGATCTGCTATACAATTTTGTATTGAGGCCATTTACACAGGGCTTAAGAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACAAACTATCTCAGGCCTGATCTTAAGCATGATAACTTCACACCCCAAGAAGAAGATCTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATAGCTCAACAACTTCCTGGAAGAACAGACAATGATGTAAAGAATTACTGGAACACAAAGGTGAAAAAGAAGCTCTCTCAATTGGGGATAGACCCTGTTACCCACAAGCCCTTCTCTAAACTCATTGCTGACTATGTAAACATTGGTGGTTGCCAGAAACCGAGTACCCGAATTGGGGCTATCAACAAAGACTTCAAGAATGCAATCCTGTTAAAATCAGAGCCAGATCAAACCCTGCCACACACCAATGGCCAACCAAAGCAACCACCAACATTGCAATCTAAAGTGGAAACAACTGGAACTAGCTTTCTAGTTAGCAGAGGTCAAAGTGATAACCTTTCAATGGATCTTTCCCAACTCCAAGACATACCAACAGTGACAGGTGCCTCAAAATGCATAGCCTTAGAGAATGAGACCATGCCATCATCTATGTTTGGGGAAAACTGTTTGTCAAAAACTTCATCACCATCTACTTCTTCTGCTTGTTCAACTTCAGCACAAGAAGCCTTATCAGTACCCTTCAGTTGGAATGACTTTCTTCTAGAAGATGCTTTTGCACCACCTGCTGATAACCAAGAACAAGAAATTGTGTCCGGGTTCTTGTCAAAGGACTTGGCGGGCCAAATAGAGAATGTCACAAGACAAAGTTGGAATAAGAAAGAGGTCAATTCACAGCATGCCCCAAACAGTGACTCCCAAATTTCATCATCCTCTGACATGTCATTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTATTTCTGAGTTTTCCTCACCTTATGGAGGAACCGTCCAACTACTGA 1083 0.4201 MVRSPCCEKISVKRGTSSAEEDAKILAFVSKHGSAIQFCIEAIYTGLKRCGKSCRLRWTNYLRPDLKHDNFTPQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKVKKKLSQLGIDPVTHKPFSKLIADYVNIGGCQKPSTRIGAINKDFKNAILLKSEPDQTLPHTNGQPKQPPTLQSKVETTGTSFLVSRGQSDNLSMDLSQLQDIPTVTGASKCIALENETMPSSMFGENCLSKTSSPSTSSACSTSAQEALSVPFSWNDFLLEDAFAPPADNQEQEIVSGFLSKDLAGQIENVTRQSWNKKEVNSQHAPNSDSQISSSSDMSFVEAMLDQENEMLFLSFPHLMEEPSNY. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03023 360 CDD SANT 70 111 IPR001005 -
Seca3g03023 360 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Seca3g03023 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca3g03023 360 FunFam Os07g0634900 protein 70 129 - -
Seca3g03023 360 CDD SANT 18 62 IPR001005 -
Seca3g03023 360 PANTHER F14D16.11-RELATED 1 360 - -
Seca3g03023 360 SUPERFAMILY Homeodomain-like 9 66 IPR009057 -
Seca3g03023 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca3g03023 360 MobiDBLite consensus disorder prediction 308 329 - -
Seca3g03023 360 Gene3D - 7 68 - -
Seca3g03023 360 Gene3D - 69 129 - -
Seca3g03023 360 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Seca3g03023 360 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca3g03023 360 SMART sant 13 64 IPR001005 -
Seca3g03023 360 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03023 Seca-Chr3 54209628 54211236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03023 1 356 MYB Transcription Factor Family AT3G28470 39.237 2.94e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g03023 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03023 K09422 - gmx:100795381 438.343