Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03018 ATGGCGGGAAATCCCTCAACACCGGATCCCTCTTCGCCAACGTCTCCCCCTGCTAGTTTCAACACGGACCAGCTTCCTCACACCCACACCAGCCGTGCCTCTGAAGGCGATGAAGCCTCCGTTAATCCTGACATCATACGAGACGAAGAACAACCCGACGAAGATGAAGAAGGGGAGGATCTTTTCAATGAGCGCTTCATGGAGGCTGCAGAGGTGGAGCTCGACAACCGTGATGGTCGCGTTTCCAATCGCAACAAACTTCCTCAGCTTCTGCACGACCAGGATACAGATGATGACAGTTATAGGCCTTCTAAAAGGGCTCGAGCTGATTTCAGGCCTCCAGTTCCAAGCGATGACGATCTTGATGGGATGCAAAGTTCACCTGGAAGGTCAGAACGAGGACACTCAAGAGAAGATGTTCCAATGACTGATCAAACTGAGGATGATCGATATGAGGATGAATATGATGATGAAGGTGGGTACCGGATGTACCATGTTCAAGGTACACTCAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCCAGAAATTCAAGGATTTCTTGCTCACATATGTCAATCCGAAAAATGAACATGGTCAATTTGAATATGTGCGCCTGATAAATGAGATGGTGTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAATTTATCTATCTCCATCGCAACATTGCCTTATGGCTGGCTCATGCACCTCAGTCTGTTTTAGAAGTAATGGACGATGTTGCCAAAAGCGTTGTCTTTCAACTCCATCCAAATTACAAAAATATACATCAAATGATTTATGTTCGCATAACCAACTTACCAGTATATGATCAGATTCGAAATATTAGGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGGTGCTCTGGAGTTTTCCCCCAATTGCAACGGGTGAAGTATGACTGTAACAAATGTGGGGCCATTTTGGGACCTTTTTTTCAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTTTCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGAATAGTTCCTGCTGGTCGACTTCCAAGATACAAGGACATTACTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTCGGTTCATTCATTTCAACTCAAAAGTTTGGTGTGCAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTTCTTTATCTTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATTGTCACCGGATCTGCTTCAGGTCTTAAGCATGTAGATGTGAAAATAGATGATCTCTACAACAAGGCTCAAGATCGTGAAATATATGATTTGAAACCCTTCTTCAGTAGCAGCCACTTTTCTAGGGCCAATTTTGTATTAGATGAAGAACGAGGAGTGATCAGACATCACCTTGCTACATGA 1569 0.434 MAGNPSTPDPSSPTSPPASFNTDQLPHTHTSRASEGDEASVNPDIIRDEEQPDEDEEGEDLFNERFMEAAEVELDNRDGRVSNRNKLPQLLHDQDTDDDSYRPSKRARADFRPPVPSDDDLDGMQSSPGRSERGHSREDVPMTDQTEDDRYEDEYDDEGGYRMYHVQGTLREWVTRDEVRRFIAQKFKDFLLTYVNPKNEHGQFEYVRLINEMVSANKCSLEIDYKQFIYLHRNIALWLAHAPQSVLEVMDDVAKSVVFQLHPNYKNIHQMIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRCSGVFPQLQRVKYDCNKCGAILGPFFQNSYSEVKVGSCFECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKDITEAHARMHLRQHVTQEDVDMAIRVLLGSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLKHVDVKIDDLYNKAQDREIYDLKPFFSSSHFSRANFVLDEERGVIRHHLAT. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03018 522 FunFam DNA helicase 177 281 - -
Seca3g03018 522 SUPERFAMILY Nucleic acid-binding proteins 186 387 IPR012340 -
Seca3g03018 522 SMART mcm 281 522 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca3g03018 522 MobiDBLite consensus disorder prediction 90 117 - -
Seca3g03018 522 Gene3D - 282 403 IPR012340 -
Seca3g03018 522 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 387 462 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca3g03018 522 Pfam MCM OB domain 284 388 IPR033762 -
Seca3g03018 522 Gene3D - 177 281 - -
Seca3g03018 522 MobiDBLite consensus disorder prediction 63 82 - -
Seca3g03018 522 Pfam MCM N-terminal domain 185 278 IPR027925 -
Seca3g03018 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 317 329 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca3g03018 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 352 366 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca3g03018 522 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 294 311 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Seca3g03018 522 FunFam DNA helicase 312 362 - -
Seca3g03018 522 MobiDBLite consensus disorder prediction 1 156 - -
Seca3g03018 522 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03018 Seca-Chr3 54121563 54124617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03018 358 517 Core DNA Replication Machinery Family AT1G44900 56.250 1.55e-44 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03018 K02540 - gmx:100799441 606.675