Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03016 ATGGACCCTCCTCTCATCAACGACTCCGCATTCTCCTCTGCTTACGCTCTCGCCGAGATTTGGGGCGGAGGAATGCCCAATTTAGGTCACACTGTTCCTCCCTTTGACGCTTCCCATTCCAATTCCATTCTTCGAGATGCTTCCGCCGAAGAATCCACCGTCACCGACCAGAGTGCCGGAAATCGCGCCAAGAGGAAGGATGCCACCTCCGAGGACGAGTGCTCCAAGATGGTTTCCACCACCACCACTGCAGCAAATCACTTGAATGATTCTGGCAATAAACGGAGAAAAATAGGAGGATCCAAGACTGAAAATGACGGATTGAAAGCTGAAGCTGAAGCAAGTTCAGCAGCTGGTAACAAGTCAGCTGAACAAAATACTAAACCTTCTGACCCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCTTGGATGAGATAATAAATTACATCCAGTCACTGCAGCATCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGACATCTACTATTGAAGGGTTTCCTTCTAAAGATTTTCAGGTTGCTACCCAGCCATTTGACATTTCTGGAATGATATTGGGATCACAAGCAGAAAGGGGGTATGCTCAGGGACCACATCCTGGATGGCTGCATATGCAGATAGGTGGTGGTTTTGAGAGAGCAACATAA 816 0.4608 MDPPLINDSAFSSAYALAEIWGGGMPNLGHTVPPFDASHSNSILRDASAEESTVTDQSAGNRAKRKDATSEDECSKMVSTTTTAANHLNDSGNKRRKIGGSKTENDGLKAEAEASSAAGNKSAEQNTKPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRMNMTSTIEGFPSKDFQVATQPFDISGMILGSQAERGYAQGPHPGWLHMQIGGGFERAT. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03016 271 MobiDBLite consensus disorder prediction 118 132 - -
Seca3g03016 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 216 IPR036638 GO:0046983
Seca3g03016 271 MobiDBLite consensus disorder prediction 45 59 - -
Seca3g03016 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Seca3g03016 271 Gene3D - 143 221 IPR036638 GO:0046983
Seca3g03016 271 FunFam Basic helix-loop-helix transcription factor 143 215 - -
Seca3g03016 271 SMART finulus 152 202 IPR011598 GO:0046983
Seca3g03016 271 CDD bHLH_AtBPE_like 136 215 - -
Seca3g03016 271 MobiDBLite consensus disorder prediction 90 109 - -
Seca3g03016 271 MobiDBLite consensus disorder prediction 74 89 - -
Seca3g03016 271 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
Seca3g03016 271 Coils Coil 193 213 - -
Seca3g03016 271 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 239 IPR024097 GO:0006355
Seca3g03016 271 MobiDBLite consensus disorder prediction 45 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03016 Seca-Chr3 54081871 54085280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03016 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 52.265 3.78e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g03016 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03016 - - gmx:100777819 365.155