Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03012 ATGCCTCAAACCTCCGCCGTCGTCAACCCCGCCGTCTCCGGCGAGTTCATGCTGTTTGGAGTGAGAGTCGTGGTTGACTCGATGAGGAAGAGCGTGAGTTTGAACAACCTCTCGCAGTACGAACACCCTCACGATGTTCCCAACAACGACATCAAAGAAGAAACTCTCGCCGCCGGCTATGCCTCCGCCGACGACGCCACTGCCGATCCTCATATCTCCGGCAAGAATCGCGACCGCGAACGCAAGCGAGGGATTCCGTGGACGGAAGAAGAGCACAAGCTATTCTTGGTGGGATTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATATCAAGAAACTTCGTCAAAACGCGCACGCCAACGCAAGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGTGCCAACCTCACTCGCCGCCGCCGTAGATCTAGCCTATTTGACATCACCACCGACACCGTCTCTGCAACCCCTGTGGCGGAAGAGCAGATCCAGCATCAAGATAATGTGTCTCCTTCGCATCCTATATACCCTGCAACCACTGAAAGTAGCAACATGAATGGATTTCCAATGTTGCCCATGTACCCTATGGGCGTTGGTTCTGGGGCCATTTCAGTTCAAGCTGGGAATCCAATGGAGAAACTCACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCAAAGAAGCTATCATGTACAATTCCTGTTGTTGCAGATCATAGAGCTTCTTCCAGAGTGTCTGATATCACTGCCAATTTGAGTTCAGCTGTTGATCCAACAACACTGTCCCTTGGGCTATCCTTGTCGTCTGGTCAAAGACAAATATCATTAAGACATTCAGCTTTACATGCAATGCCATGCCTCAAAATGGAGATAGCATCATAA 885 0.5051 MPQTSAVVNPAVSGEFMLFGVRVVVDSMRKSVSLNNLSQYEHPHDVPNNDIKEETLAAGYASADDATADPHISGKNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRANLTRRRRRSSLFDITTDTVSATPVAEEQIQHQDNVSPSHPIYPATTESSNMNGFPMLPMYPMGVGSGAISVQAGNPMEKLTLGQGNVEQNGPKKLSCTIPVVADHRASSRVSDITANLSSAVDPTTLSLGLSLSSGQRQISLRHSALHAMPCLKMEIAS. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03012 294 FunFam transcription factor MYB1R1 85 136 - -
Seca3g03012 294 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Seca3g03012 294 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Seca3g03012 294 SMART sant 83 133 IPR001005 -
Seca3g03012 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Seca3g03012 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Seca3g03012 294 PANTHER TRANSCRIPTION FACTOR KUA1 15 219 - -
Seca3g03012 294 Gene3D - 85 137 - -
Seca3g03012 294 CDD SANT 86 131 IPR001005 -
Seca3g03012 294 ProSiteProfiles SANT domain profile. 87 135 IPR017884 -
Seca3g03012 294 SUPERFAMILY Homeodomain-like 81 135 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03012 Seca-Chr3 54044776 54047435 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g03012 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03012 - - gmx:778057 366.311