Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03006 ATGTCAGACCCTAGTCATGCAATTGCTAAAGCTGTGGTTGCTACAGCTGTGGCAATGTTATTCATTGCAGGGATTTTCTTTTACTTCCTCCAAAAATTTGTTCTTGCTAGGTACCACCAGAGACACAAAGTTGCTGCAACTTATCTTCGAGAACAAGGAGTGAACCATGAAGATATAAGAAAAGCTGGTGGTAATGTGAAAGCACTAATAGTAGAAGAAAATGGGGTTGATATTCTTTATATGATGGACACAGAAAGTAGACAATTGATAACTGGTTTCCCAAATAGCATGTTCAATCCAAGTTATGAAGATGATGAAGAAGAAAAGAGAATAATAGATGTCATGGTCCAAAGGTCCAAAATGTCCATGCCTCATGAGACTCCAATGGCATGTGAATCTCCAGGGTTGAATGGTCATCAAAATCTAGTTAAACCAGTATCACAAGTATCTACCCTGCCACATTCACTTGAATTAGCACCTTCACTTCCAAAACCTTCACCACCACCTCCTCCTCCACCACCACCACCAAGAAAGGAAATTCCAAAGGCACCACCTTTGCCTTCTTCTTCCACCATGTATAGAAAAAGTGCACCACCACCACCTGGTCCACCTCCACTTCCAAAGGGCAAAGGTTTTATTTCATCACTGAAACCCCCACCAGTGCCTAAAGTGAAAGCAAACATCAAAAACACCAAAGAGGGTACAATAGGGGAGAGCTCAAGAGAAAAGGGTGCTGGCCAAACTAGGCTGAAGCCTCTACATTGGGATAAGGTTGTAGCTAATGTTGATCATTCAACAGTGTGGGATCAGATCAATGATGGCTCTTTTCGGTTTGATGATGAACTCATGGAATCACTCTTTGGATATTCAACCAATGATAAAACCAATGAAAGAAGCATGAGTGTTTCAACTTTGGCCAAGTCTAATTCCAACACACCAACTCAAATATTCATTCTGGAGCCAAGAAAATCTCAGAACACAGCAATTGTTCTGAGATCACTAGCAGTTTCCCGCAAGGGAATCTTGGATTCATTACTTGATGGTCAAGGACTCAGTGTTGAGACACTTGAGAGACTCACTAAGATAGCTCCCTCTCAAGAAGAAGAAGCCAAAATTATCCAATTCAATGGCAACCCTGATAAGCTTGCTGATGCTGAGTCTTTCCTATACTACATTCTGAAGGCAGTTCCAACAGCATTCAATCGTTTGAAAGCAATGCTTTTCAGGTCCAATTATGATTGTGAAGTTCTTCAGCTCAAGGAACACCTACAAACACTTGAATTGGGTTGTAAGGAACTGAGGACTAGTGGCCTTTTTCTGAAACTCCTTGAGGCTATTCTCAAAACTGGGAACAGGATGAATTCTGGAACTTCAAGAGGCAATGCACAAGGTTTCAACCTCAGCACTCTTAGAAAACTTTCTGATGTGAAAAGCACAGATGGGAAGACTAGTTTGCTTCACTTCATTGTGGAACAAGTAGTTCAATCAGAAGGGAAAAGGCAAGCTATAAATAAAAAGCACAACTTTCTCATAAGCAATGGTGAAACAAGCAATATGATACAACAAGAGGAAGATAGAGAATATCTAATGCTTGGTTTACCAGTGTTAGGTGGGCTAAGTGATGAGTTATCTGAAGCAAAGAAAGCTGCTAGCATTGAGTATCACAATTTCATCACTATGTGTTCCACTCTCAGTGCTCATGTTGTTGAAATTCGACAGATTATAACATGCTGTGGCAACACTGAGAGAGGTGGATTCATCAAGGAAATGAAAGGGTTCCTAGAGGAATGTGAGGAGGAGCTTAAGGTGGTGAAGGAGGAACAGACAAGGATCTTGGAGCTTGTGAGAAAAACGAATGAGTACTATCTAGCAGGTGCATCTAAAGACAATATGTCAAACCCCTTTCAGCTGTTTGTTATTGTAAAAGATTTTGTTGACATGGTAGATCAGGCTTGCATAGAACTTAAAAGGAAGCTAGAAAAGAAGAATGTAGGAGTAGAGGCTTTATCAACACCACCTTTGTCACCATCAAAGAGGGCACCACTCAGATTCCCTAACTTTGATTTATATTTTCTGTCAAATAAGTCAGAAACTACATATTCAAGCCAATCAGAAGATGATTTCTGA 2127 0.4053 MSDPSHAIAKAVVATAVAMLFIAGIFFYFLQKFVLARYHQRHKVAATYLREQGVNHEDIRKAGGNVKALIVEENGVDILYMMDTESRQLITGFPNSMFNPSYEDDEEEKRIIDVMVQRSKMSMPHETPMACESPGLNGHQNLVKPVSQVSTLPHSLELAPSLPKPSPPPPPPPPPPRKEIPKAPPLPSSSTMYRKSAPPPPGPPPLPKGKGFISSLKPPPVPKVKANIKNTKEGTIGESSREKGAGQTRLKPLHWDKVVANVDHSTVWDQINDGSFRFDDELMESLFGYSTNDKTNERSMSVSTLAKSNSNTPTQIFILEPRKSQNTAIVLRSLAVSRKGILDSLLDGQGLSVETLERLTKIAPSQEEEAKIIQFNGNPDKLADAESFLYYILKAVPTAFNRLKAMLFRSNYDCEVLQLKEHLQTLELGCKELRTSGLFLKLLEAILKTGNRMNSGTSRGNAQGFNLSTLRKLSDVKSTDGKTSLLHFIVEQVVQSEGKRQAINKKHNFLISNGETSNMIQQEEDREYLMLGLPVLGGLSDELSEAKKAASIEYHNFITMCSTLSAHVVEIRQIITCCGNTERGGFIKEMKGFLEECEEELKVVKEEQTRILELVRKTNEYYLAGASKDNMSNPFQLFVIVKDFVDMVDQACIELKRKLEKKNVGVEALSTPPLSPSKRAPLRFPNFDLYFLSNKSETTYSSQSEDDF. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03006 708 SMART it6_source 240 663 IPR015425 -
Seca3g03006 708 Pfam Formin Homology 2 Domain 245 648 IPR015425 -
Seca3g03006 708 MobiDBLite consensus disorder prediction 194 208 - -
Seca3g03006 708 Coils Coil 587 614 - -
Seca3g03006 708 SUPERFAMILY Formin homology 2 domain (FH2 domain) 198 662 - -
Seca3g03006 708 PANTHER FORMIN-RELATED 4 686 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca3g03006 708 ProSiteProfiles Formin homology-2 (FH2) domain profile. 240 674 IPR015425 -
Seca3g03006 708 Gene3D Formin, FH2 domain 262 668 IPR042201 -
Seca3g03006 708 MobiDBLite consensus disorder prediction 160 183 - -
Seca3g03006 708 MobiDBLite consensus disorder prediction 147 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03006 Seca-Chr3 53873198 53875803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03006 8 706 FH2 protein (formin) Gene Family AT1G70140 40.756 4.59e-168 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03006 - - gmx:100791689 1024.62