Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03005 ATGGCAGCCGCCGGCGATGTTCTCAGGCAGAGTTTCCCGGAAGTGAGTTCCGGGGAACTGCACGTGCTTGCTGTTGATGACAGCCACGTGGACCGTAAGGTCATTGAACGGTTGCTCAAAATCTCATCTTGCAAAGTGGATTCTGAAGGTTATTGGAACTGGGTTTTTGCAGTGACGGTGGTAGAGAGTGGAACCAGAGCTCTACAGTATCTGGGGTTGGATGGGGACAAAAGCTCCATTGATATTGATACTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCAGGGATGACTGGATATGAACTACTCAAAAGGATAAAGGAGTCATCTGTTTTCAGAGAAATTCCGGTGGTGGTTATGTCCTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTAAAGTTGTCTGATGTAAAAAGGTTAACAAATTTCATCATGAGAGGTGAAGGAAAGAAGGGAGAAAAAAGATCTCAAAAAAGAAGCCGATCAGAGGATTGCAATCCATCTCTATCATCATTTTCCTCAAAGAAGTCAAGATTGTGA 585 0.4393 MAAAGDVLRQSFPEVSSGELHVLAVDDSHVDRKVIERLLKISSCKVDSEGYWNWVFAVTVVESGTRALQYLGLDGDKSSIDIDTVKVNLIMTDYSMPGMTGYELLKRIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTNFIMRGEGKKGEKRSQKRSRSEDCNPSLSSFSSKKSRL. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03005 194 CDD REC_typeA_ARR 22 155 - -
Seca3g03005 194 MobiDBLite consensus disorder prediction 178 194 - -
Seca3g03005 194 Pfam Response regulator receiver domain 22 153 IPR001789 GO:0000160
Seca3g03005 194 SMART REC_2 20 156 IPR001789 GO:0000160
Seca3g03005 194 ProSiteProfiles Response regulatory domain profile. 21 160 IPR001789 GO:0000160
Seca3g03005 194 MobiDBLite consensus disorder prediction 163 177 - -
Seca3g03005 194 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 186 IPR045279 GO:0009736
Seca3g03005 194 MobiDBLite consensus disorder prediction 163 194 - -
Seca3g03005 194 Gene3D - 20 190 - -
Seca3g03005 194 SUPERFAMILY CheY-like 19 161 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03005 Seca-Chr3 53866518 53869354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03005 3 176 Response Regulator Gene Family AT1G19050 62.011 1.78e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g03005 Response_reg 6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03005 K14492 - gmx:100306152 279.641