Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02999 ATGTTATCTCCGTGTAGAAGTCCCTCATCCTTCTCATGGTTGTTGTACTTCTTCCAGCAAAAGCCTAACAGGATTTGGTTAGGCACATTCCCTACACCTGAAATGGCTGTTGCTGCTTTTGCTCTTAAGGGTAAGGATGCTGAGCTTAACTTCCCTGGCTCAGCTGCTTCATTGCCTGTCCCTGCTTCTCTGTCTGCCTGTGATATGCACCTGGCTGCAGTCAGTGCTGCTGCTGCTGCTGTGGCAGCAAAGGATAAGTTGTGTGACCTTGTCGTTGTCTTGGTTATGTTAGGCTTCTCTCAATTCACAGGAACATTGGATAAGTTGTCTGTTAGTCTCTTGGTTCTTAACATAATAGTAAGAGAACATTGGATAAGTTCCCTTGAAGCCATGCTATTTGAAGGATCATACAGCAAACATTTGATGGGAATTGCACTTTCTCTGCTTATTTCTTTTGAAATATGA 465 0.4366 MLSPCRSPSSFSWLLYFFQQKPNRIWLGTFPTPEMAVAAFALKGKDAELNFPGSAASLPVPASLSACDMHLAAVSAAAAAVAAKDKLCDLVVVLVMLGFSQFTGTLDKLSVSLLVLNIIVREHWISSLEAMLFEGSYSKHLMGIALSLLISFEI. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02999 154 Gene3D AP2/ERF domain 6 53 IPR036955 GO:0003700|GO:0006355
Seca3g02999 154 SMART rav1_2 12 58 IPR001471 GO:0003700|GO:0006355
Seca3g02999 154 SUPERFAMILY DNA-binding domain 20 53 IPR016177 GO:0003677
Seca3g02999 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02999 Seca-Chr3 53800282 53800746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02999 20 65 AP2-EREBP Transcription Factor Family AT2G36450 68.627 7.95e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02999 - - pvu:PHAVU_007G222600g 88.1965