Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02998 ATGTCGTCTTCTACAACCTCTTCCAGGCACCATACCTATAATCGAAAGCAGAAATCTCTCGGCCTCTTGTGTACCAATTTCTTGAGCTTGTATAACAAAGACGGAATCCACTTGATCGGTCTCGACGACGCCGCTTCACGATTAGGGGTTGAACGGCGCCGGATCTATGATATAGTTAATGTCTTGGAGAGTGTTGGTGTGCTTGCTAGGAGAGCTAAGAATCAATACACTTGGAAAGGGTTTGCGGCCATTCCCGGAGCTTTACAGGACCTCAAGGCTGAGGGTTTGAGGGAGAATTCCACTACTTTCGATGTTGCCAATGACAGTGCAAAAATGTCTGATGATGAGGATGATGCAATATCCAATCCCAGTACTGAAAGTCAGAATGACAAGCCGAATGCTGATTGTGCCAATATTGTCAAATCTTCGAAGAATGAAAACAGAAGGGAAAAGTCTCTTGCACTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGACGAAGCTGCAAAATTGTTGCTGGGAAATGCCCATAACACATCAATCATGAGAAGTGAGTAA 585 0.4376 MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKDGIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLARRAKNQYTWKGFAAIPGALQDLKAEGLRENSTTFDVANDSAKMSDDEDDAISNPSTESQNDKPNADCANIVKSSKNENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRSE. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02998 194 Gene3D - 142 191 IPR036388 -
Seca3g02998 194 Gene3D - 10 83 IPR036388 -
Seca3g02998 194 MobiDBLite consensus disorder prediction 103 135 - -
Seca3g02998 194 PANTHER TRANSCRIPTION FACTOR E2F 5 192 IPR015633 GO:0000978|GO:0006357
Seca3g02998 194 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Seca3g02998 194 FunFam E2F transcription factor 8 10 82 - -
Seca3g02998 194 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
Seca3g02998 194 SMART E2F_TDP_2 148 191 IPR003316 GO:0005667|GO:0006355
Seca3g02998 194 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02998 Seca-Chr3 53793844 53795427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02998 14 85 E2F-DP Transcription Factor Family AT3G48160 36.364 1.19e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca3g02998 E2F_TDP 3.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02998 K09391 - gmx:100818090 279.641