Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02993 ATGTCTTCTTCTGCTATTGTTATGTCTACTCCAAAGCATGATGTGTTTCTCAGCTTCAGAGGGGAAGACACCCGCGACAACTTCATTAGTCATCTCTATGCTGAACTTCGCAGGAAAAAGATTGAAACATTCATTGATTACAGACTCGGCAGAGGCGAAGAGATTTCCCTGGCACTCCACAAAGCAATAGAAGAATCAATGATTTATGTCATTGTTTTCTCTGAACACTATGCTTCTTCCACGTGGTGTTTGGATGAACTCACAAAGATACTCGAATGCAAGAAGAGATTTGGAAGGGATGTCATACCAGTTTTCTATAAGGTGGATCCATCAAATGTTAGGCACCAGAGAGAAACTTATGCAGAAGCTTTTGTTAAGCATGAACAGCGATTTAAGGACAAGGTGCATGCGTGGAAAGCTGCTCTAACTGAAGCCGCAGGACACTCAGGCTGGGATTCACAAGTAACCAGGTTAGTTTGTAGGTTGAGGACTAATGCTTTAGTTTCTTTAATATATGCCAGACCAGAATACACACTTGTTGCAGGCATTGTGAAAGATATTTTGAGAAAATTGAATCATTCTTTCTCAAGTGATTATCAAGGAATGATTGGAATTGACAATCATATTGCACAAATCCAGTCCTTGCTGCACCTTGAGTCAGGGGGTGTTCGGATCATTGGAATTTGGGGCATGGGAGGGATCGGTAAAACAACTATTGCTAGTGCAATATATCACAAACTGGCAACTCAATTCAATTCCAGAAGCTTCATTGTAAATGTTCAAGAAGAAATAGAAAAATATGGAATAAGCCCTACACGAAGCAAATATTTATCAGAGCTTCAAGATGATTCTGGATTAAGTTTTTCATATGAAAGGAGCAGACGGGAAAAGGTTCTCCTTATTCTTGATGGCCTGAACAGTTCGGGTCAATTTAAAGATTTAATTCTACCACTTAACTTACCTCAGGGCAGCAGAATTATTCTCACTAGTAGAGACATGCAAGAGCTGAAGAATGCCAGAGCTGATGAAATATATGAAGTCAAGGAGATGAATTTTCATGATTCCCTACAACTCTTTAGTTTAAATGCCTTCAAACAAAACTATCCCATAGAAACTTATACTGGCTTGTCAGAAAAAGTGATAAATTATGCTAAAGGGATTCCATTAGCTCTCAAAGTTTTGGGCTCATTGCTTTATGGTAGAACAAGGGAAGCATGGGAAAGTGAGTTGCAAAAGCTGGAAAAGCTTCCAGATCTTAAAATCTTCAATGTGTTGAAATTAAGTTATGATGGGCTTGATGATGAACAGAAGGACATATTTCTTGACATAGCTTGCTTCTATAAAGGACATTTGGAGAAAAGTGTAGCACAAACACTAGATAGCTGTGGTTTCTCTACTGACATTGGAATGGATGTTCTTAAAGATAGGTGTCTTATATCTGTTTTGGAAGGTAGAATCATGATGCATGATCTTATACAGGAAATGGGAAAAGAAATTGTTCGGCAACAATGTGTCAATAATCCTACAAAACGCAGTCGATTATGGAAGGATAAGGAAATTTGTCATGTTTTGAGACAGAACAAGGGGACAGATGCTATCCAGTGTATATTCCTTGACACATGCAAAATTAAAAAAGTTCAACTACATGCTGAAACTTTCAAGAAGATGCATAGTCTGAGAATGCTCCAATTCTACAAGTCTTCTGGATTTTGGGAACACTCAAATGTGATCCTTCCTGCATTTCTTGAAAGTCTTCCGGATAATTTAAAATTTCTTCGTTGGGATGGCTTTCCTCAAAGAACTTTGCCGCTAGACTTTTGCCCAGAAAACCTTGTTAAACTTGATATGCGTAATAGCCATCTTGAACAACTTTGGGAGGGAGATCAGGATTTACCGAATTTGAAAAGCCTCAATCTTAGTTTTTCTCGGAAGCTGATTCGAATACCAGACCTCTCTCTATCTCCAAAAATTGAAGAAATAATTCTTAGTCATTGTGAAAGCTTGGTTCAAGTTTACTCCTCGAGTTTCCTCAGCAAACTCAACTGTTTATTTTTAGATGGTTGCATTGAGCTTAGGAATTTAAACCTTCCCAGCAACATTCTATCGGGATCTTCTGGATTAGTTGTTCTATGTAAGTGTCGCAAGCTTGAAACATTTTCAATCAGCAGTAGAACTGAGGCGGTTCAATCATACAATTGTTTGCGTTGTGATGGATTCTGGGGAGCAGTAGAAATTTTCCGTGAAGCAAAAGTTAACCTATATAATGGAAATCTTATCCGGTTCAATGGAAAAGGTGGCATGAGATATTCTTCAGATACTTTTGACCCCATTATTTGTGCTGACAGATATGAAAAAGAAGAAGTGGCAGATAATGTACGCTTACTAAACATGAAAGTGATGATAGAAACTATGCCTTCATTATTTCCAAGTCTCAATGAGCTTTGTTGGTTAGATATATCTGATTGTGAATCCCTTACAAGCCTTCCAATGGACCTTTGTAAGTTGAAATTTCTAAGAAGACTTTATCTCCGTGGTTGCTCAAATTTGGAAAATTTCCCTGAAATCAAGGAGACAATGGAAAATTTAACGGTGCTCATCTTAGATGAAACAACAATAAAGGAGCTACCTTCATCCTTGCACCATTTGGTAGGGCTTGAAGTATTGAGCTTGCATAATTGCTCGAGGCTTGAGATTATTCCATCTTCCATTGGAAGTCTCATTAAACTCTGCAAGTTAGACCTTACTTGCTGTGAATCACTAGAGACTTTTCCAAGCAGCATTTTCAAATTGAAATTAACAAAACTTGATTTGCGTGGTTGCACAATGCTAAAGAGATTCCCAGAGATCTTGGAGCCTACAGAAAGTTTTGTTCACATTAGCTTAACAAAAACAGCAATTAAAGAACTACCTTCATCATTGGACTATTTGGTTGGGCTTCGAACCTTGCGTCTGAACCTATGCAATGATCTGGAGTCACTTCCAAATAGCATTGTTAATCTAAACCATCTCTCTGAGCTTGATTGTTCAGGCTGTGGCAAATTAACAGAAATCCCAAATGATATAGGTCGCATGTCATCATTAAAAGAATTTTCACTGCAAGGAAGCAGTATTGTGAACCTTCCTGAGAGTATTGCTCTTCTTTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAAGCTTGAATGTATCCCACAACTTCCACTATTTCTGAAACAGTTATTGGCGTTTGATTGCCCATCCATTAGAAGAGTGATGTCAAATTTAAGGCTTGAACTCCCATCAGATTCCAAAGAGGGTACCTTTAAATTTCATTTCACCAATAGTGAAGAACTTGATCCAAGTGCTCAAAGTAATATTATGGCTGATGCATGGCTTAGGATCACTGAGGATGCATATAGGTCTGTGTTCTTTTGTTTTCCAGGAAGTACAGTTCCTCATTGGTTCCCTTATCGCTGTGGGGGACATTCAATAACTGTGAATAAGGATTCTCTAAATTGGTGCAATGAAAATAGGCTCATTGGTTTCGCCCTATGTGTCGTTTTGGAACTTAAAGATATGGATGATACAGAACGAAGATGTGGATCTGGTGTTTTTAGATACAGATTAACATTTGAATATGATGGTTGGAAAAACAGTCTTCCCAACCATGATGAGCTAAGAAACTATTTCTATTGGAAGGGTCGAGAGAGGTTTGTTGCCCAAGATCACATATTCCTATGGAAATATCACTTGGACTCTTCAAGTATCAATGAGGGGCTCTTTCATGCCAACAACTTCACGTTTAAGATCAGCAAATATAATGATGGTAGCTTTCAGCGGTCATATTTTAAATCAATTGCCATGAATCAGAAGTACTATGGTTATGACATTTCCATTGGTCCACCATGTCAGTATAGGTTGACTTGCTTTGTTCTCTCATTAACCACAGTTTCCTCAAACTGTTACAATTTTGGCTCCATAAACTTTCAAGCATCAAGACAGGATGTCGCCAAATTTGGTGGCTTGCAATACAGCAAGGGCAATATCAATTCTTGA 4038 0.3816 MSSSAIVMSTPKHDVFLSFRGEDTRDNFISHLYAELRRKKIETFIDYRLGRGEEISLALHKAIEESMIYVIVFSEHYASSTWCLDELTKILECKKRFGRDVIPVFYKVDPSNVRHQRETYAEAFVKHEQRFKDKVHAWKAALTEAAGHSGWDSQVTRLVCRLRTNALVSLIYARPEYTLVAGIVKDILRKLNHSFSSDYQGMIGIDNHIAQIQSLLHLESGGVRIIGIWGMGGIGKTTIASAIYHKLATQFNSRSFIVNVQEEIEKYGISPTRSKYLSELQDDSGLSFSYERSRREKVLLILDGLNSSGQFKDLILPLNLPQGSRIILTSRDMQELKNARADEIYEVKEMNFHDSLQLFSLNAFKQNYPIETYTGLSEKVINYAKGIPLALKVLGSLLYGRTREAWESELQKLEKLPDLKIFNVLKLSYDGLDDEQKDIFLDIACFYKGHLEKSVAQTLDSCGFSTDIGMDVLKDRCLISVLEGRIMMHDLIQEMGKEIVRQQCVNNPTKRSRLWKDKEICHVLRQNKGTDAIQCIFLDTCKIKKVQLHAETFKKMHSLRMLQFYKSSGFWEHSNVILPAFLESLPDNLKFLRWDGFPQRTLPLDFCPENLVKLDMRNSHLEQLWEGDQDLPNLKSLNLSFSRKLIRIPDLSLSPKIEEIILSHCESLVQVYSSSFLSKLNCLFLDGCIELRNLNLPSNILSGSSGLVVLCKCRKLETFSISSRTEAVQSYNCLRCDGFWGAVEIFREAKVNLYNGNLIRFNGKGGMRYSSDTFDPIICADRYEKEEVADNVRLLNMKVMIETMPSLFPSLNELCWLDISDCESLTSLPMDLCKLKFLRRLYLRGCSNLENFPEIKETMENLTVLILDETTIKELPSSLHHLVGLEVLSLHNCSRLEIIPSSIGSLIKLCKLDLTCCESLETFPSSIFKLKLTKLDLRGCTMLKRFPEILEPTESFVHISLTKTAIKELPSSLDYLVGLRTLRLNLCNDLESLPNSIVNLNHLSELDCSGCGKLTEIPNDIGRMSSLKEFSLQGSSIVNLPESIALLSSLKSLDLSDCKKLECIPQLPLFLKQLLAFDCPSIRRVMSNLRLELPSDSKEGTFKFHFTNSEELDPSAQSNIMADAWLRITEDAYRSVFFCFPGSTVPHWFPYRCGGHSITVNKDSLNWCNENRLIGFALCVVLELKDMDDTERRCGSGVFRYRLTFEYDGWKNSLPNHDELRNYFYWKGRERFVAQDHIFLWKYHLDSSSINEGLFHANNFTFKISKYNDGSFQRSYFKSIAMNQKYYGYDISIGPPCQYRLTCFVLSLTTVSSNCYNFGSINFQASRQDVAKFGGLQYSKGNINS. 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02993 1345 Gene3D - 349 433 IPR042197 -
Seca3g02993 1345 Pfam C-JID domain 1140 1279 IPR045344 -
Seca3g02993 1345 Pfam NB-ARC domain 207 415 IPR002182 GO:0043531
Seca3g02993 1345 Gene3D Ribonuclease Inhibitor 790 931 IPR032675 -
Seca3g02993 1345 SUPERFAMILY L domain-like 799 1080 - -
Seca3g02993 1345 Pfam TIR domain 12 201 IPR000157 GO:0007165
Seca3g02993 1345 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 162 - -
Seca3g02993 1345 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 717 IPR044974 GO:0006952
Seca3g02993 1345 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 151 IPR035897 -
Seca3g02993 1345 ProSiteProfiles TIR domain profile. 11 191 IPR000157 GO:0007165
Seca3g02993 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 443 IPR027417 -
Seca3g02993 1345 Gene3D - 193 345 IPR027417 -
Seca3g02993 1345 SMART till_3 12 148 IPR000157 GO:0007165
Seca3g02993 1345 SUPERFAMILY RNI-like 589 850 - -
Seca3g02993 1345 Gene3D - 8 192 IPR035897 -
Seca3g02993 1345 PRINTS Disease resistance protein signature 225 240 - -
Seca3g02993 1345 PRINTS Disease resistance protein signature 629 645 - -
Seca3g02993 1345 PRINTS Disease resistance protein signature 292 306 - -
Seca3g02993 1345 PRINTS Disease resistance protein signature 384 398 - -
Seca3g02993 1345 Gene3D Ribonuclease Inhibitor 516 754 IPR032675 -
Seca3g02993 1345 SUPERFAMILY "Winged helix" DNA-binding domain 420 524 IPR036390 -
Seca3g02993 1345 Gene3D Ribonuclease Inhibitor 932 1095 IPR032675 -
Seca3g02993 1345 Pfam Leucine Rich Repeat 610 629 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02993 Seca-Chr3 53774428 53780036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02993 813 982 WRKY Transcription Factor Family AT4G12020 36.471 2.23e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02993 - - ccaj:109803335 1530