Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02991 ATGGCAATCCCAATACCGAGTAGAGAGCTATTCATAGATGGAGAGTGGAGAGTTCCACTCCTCAAAAACAGGATTCCAATCATCAACCCTTCCACTGAGAACATAATTGGGAATATCCCAGCTGCTACTAAGGAAGATGTGAACCTTGCAGTGGAAGCTGCTAGAAGAGCACTGTCCCGTAACAACGGTAGAGATTGGTCAACTGCTTCTGGCTCTGTTCGTGCTCGCTATCTTCGAGCCATCGCTGCAAAGATAACGGAGAAAAAGAATGAACTAGGAAAACTTGAAGCGATGGATTGTGGAAAACCACTGGAGGAAGCACTAGCGGACCTGGATGATGTTGTTGGTTGTTTTGAGTATTATGCTGGGCTTGCCGAAGGGTTGGATGCAAAGCAAAAGACTCCTGTAAATCTTCCTATGGAGACCTTCAAGAGTTATGTCCTCAAGGAGCCCATTGGGGTTGTTGCATTAATTACTCCATGGAACTATCCTCTTTTAATGGCTACATGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTACTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACCTGTTTGGAGCTGGCTGAAATATGCAGAGAAGTGGGCCTTCCTCCAGGTGTATTGAATATCGTCACTGGATTAGGCCATGAAGCCGGTGCTCCTTTGGCATCCCATCCTGATGTAGACAAGATTTCCTTTACTGGAAGCTCTGTAACTGGGAGCAAGATTATGACAGCCGCAGCACAACTTACCAAGCCTGTTTCACTAGAGCTTGGTGGGAAAAGCCCAATCATTGTTTTTGAGGATGTGGACCTTGATAAGGTTGCTGAATGGACCATCTTTGGCTGCTTCTTTACAAATGGTCAGATATGCAGTGCAACATCTCGCCTTATTGTGCATGAAAGTATAGCAACGGAATTTGTGAATAGGCTTGTGAAATGGGCCAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGCCCTATTGTCAGTGAAGGACAGTATAAAAAGGTATTGAATTTTATCTCAACTGCTAAGAGTGAGGGTGCAACAATTTTGACTGGTGGTTGTCGCCCAGAGCATTTAAAGAAGGGATACTTTGTTGAACCAACCATCATAACTGATGTAACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTCTCTGTGAAAACATTTAGCACTGAGGAAGAAGCTATTCATCTTGCAAATGACACTCACTACGGCCTAGGGTCTGCTGTAATGTCAAGTGATCTAGAAAGATGTGAACGTCTATCTAAGGCTCTTCAAGCTGGAATTGTGTGGATCAATTGTGCTCAACCAAGTTTCATTCAAGCCCCATGGGGAGGCGTTAAACGTAGTGGTTTTGGTCGTGAATTAGGAGAATGGGGACTTGAAAACTACTTGAGTGTGAAGCAAGTGACTAGGTACATATCTGATGAACCGTGGGGCTGGTATCAGTCTCCTTCAAAGCTGTGA 1512 0.4444 MAIPIPSRELFIDGEWRVPLLKNRIPIINPSTENIIGNIPAATKEDVNLAVEAARRALSRNNGRDWSTASGSVRARYLRAIAAKITEKKNELGKLEAMDCGKPLEEALADLDDVVGCFEYYAGLAEGLDAKQKTPVNLPMETFKSYVLKEPIGVVALITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELAEICREVGLPPGVLNIVTGLGHEAGAPLASHPDVDKISFTGSSVTGSKIMTAAAQLTKPVSLELGGKSPIIVFEDVDLDKVAEWTIFGCFFTNGQICSATSRLIVHESIATEFVNRLVKWAKNIKISDPLEEGCRLGPIVSEGQYKKVLNFISTAKSEGATILTGGCRPEHLKKGYFVEPTIITDVTTSMQIWREEVFGPVLSVKTFSTEEEAIHLANDTHYGLGSAVMSSDLERCERLSKALQAGIVWINCAQPSFIQAPWGGVKRSGFGRELGEWGLENYLSVKQVTRYISDEPWGWYQSPSKL. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02991 503 SUPERFAMILY ALDH-like 6 490 IPR016161 GO:0016491
Seca3g02991 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Seca3g02991 503 CDD ALDH_F10_BADH 27 487 - -
Seca3g02991 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Seca3g02991 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Seca3g02991 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 275 - -
Seca3g02991 503 Coils Coil 78 98 - -
Seca3g02991 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Seca3g02991 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Seca3g02991 503 PANTHER ALDEHYDE DEHYDROGENASE 4 502 - -
Seca3g02991 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02991 Seca-Chr3 53753864 53759647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02991 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 78.443 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02991 K00130 - gmx:100170755 937.562