Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02990 ATGGCGAAATCGGTCAGCCCAGACGCGATTTCCACTTTGCTAGCTAACCCCTCGCCTGAATCTTCATCAGATCTTCCCGAAATCGTTGTCCAAGTTCTCGATCTCAAGCAAAGCGGCAACAGATACATGTTCACTGCTAGTGATGGAAAAATGAAGCTGAGGGCTATTCTTCCTTCGAATATGTACTCTGAGGTTCTCTCTGGGAATATTCAGAACCTGGGCCTGATTCGTATCCTAGATTACACTCTCAACGATATCCCCAATAAGTCTGAGAAATACCTTATTGTCACCAAGTGTGAGTCGGTTTCTCCTGCGCTTCAAATGGAGATAAAAAGCGAGCAAAGTGGGATTGTTTTGAAGCCCAAGGAAGAGGTTGCAGTGAAGAGTGAAGCTGCTGCCGGTATTGTTTTGAAGCCGAAGCAGGAAGTGGTGGCAAAATCTGCTGCTCAGATTGTGCATGAGCAACATGGAAATGTGGCTCCTGCTGCACGTATGGCCATGACGCGCAGGGTGCGTCCTCTTGTTTCCTTGAATCCTTATCAGGGTAATTGGACAATAAAGGTTAGTGTTACCAGCAAAGGGAACATGCGTACCTACAAGAATGCCAGAGGGGAAGGTTGCGTCTTCAATGTGGAGTTGACAGATGAAGATGGTACTCAGATTCAAGCTACCATGTTTAATGATGCTGCAAGAAAATTTTATGACAAATTTGTTCTGGGGAAGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGACTATGAAATGACACTAAATGAGAATTCTGAGGTGGAAGAGGTGGCCAATGAAGCGAGTTTTGTTCCAGAAACAAAATTCAACTTTGTCCCAATTGATCAGCTGGGTCCTCATGTCAATAAGACTGACCTTGTTGATGTCATTGGAGTTGTTCAGAATGTGTCTTCAACAATGAGTATTCGAAGGAAGAGTAACAATGAGAGTATTCCTAAGCGTGACATTACAATTGCTGATGAGACGAAGAAGACAGTAGTTGTGTCCCTGTGGAATGAGCTTGCAACTAACATAGGACAAGAGTTATTGGACATTGCTGATAAGTCTCCAGTAGTTGCAATCAAATCCCTCAGGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTGCAGTTCTGATTAATCCAGTCATACCTGAAGCGAAGAAACTCAGAAGCTGGTATGATGTTGAAGGTAAGGATGCTGCAATGGCTTCTGTAGGATCTGGCTCAAGTCCATCATCCAACAGTGCTAGCAGATCAGTGTATTCTGATCGCGTTTCAATTTCTCACATAACCACTAACCCATCCTTGGGGAATGACAAGCCTGCGTTTTTCAGTATTAGAGGATATATAAGTTCCATAAGGCCGGACCAGGCTATGTGGTATCGTGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGTGTTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGATGATCAGTGCAACTTAAGGTATATTATGGTTGTAAGAGTTTCTGATGCCAGTGGTGAGTCTCTTGTCTCAGTCTTTAATGAGGAAGCTGAGAAGATCGTTGGGTGCTCTGCTGATGAGCTAGATAACCTTAGATCACAGGATGGTGAAGATAATCCTTATCAACTAAAATTGAAGCAAGCTACTTGGGTTCCGCATCTTCTCCGGGTTAGTGTTACTCAGAATGAGTACAATAATGAGAAGCGGCAAAGGATAACAGCCAGGGCGGTTGTTCCTGTTGATTTTGCTGCAGAATCAAGAATTCTCCTTGAAGATATATCAAAGATGAGAGTTTTGCAATAA 1857 0.4303 MAKSVSPDAISTLLANPSPESSSDLPEIVVQVLDLKQSGNRYMFTASDGKMKLRAILPSNMYSEVLSGNIQNLGLIRILDYTLNDIPNKSEKYLIVTKCESVSPALQMEIKSEQSGIVLKPKEEVAVKSEAAAGIVLKPKQEVVAKSAAQIVHEQHGNVAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEASFVPETKFNFVPIDQLGPHVNKTDLVDVIGVVQNVSSTMSIRRKSNNESIPKRDITIADETKKTVVVSLWNELATNIGQELLDIADKSPVVAIKSLRVGDFQGVSLSAISKSAVLINPVIPEAKKLRSWYDVEGKDAAMASVGSGSSPSSNSASRSVYSDRVSISHITTNPSLGNDKPAFFSIRGYISSIRPDQAMWYRACKTCNKKVTESVGAGYWCEGCQKNDDQCNLRYIMVVRVSDASGESLVSVFNEEAEKIVGCSADELDNLRSQDGEDNPYQLKLKQATWVPHLLRVSVTQNEYNNEKRQRITARAVVPVDFAAESRILLEDISKMRVLQ. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02990 618 Pfam OB-fold nucleic acid binding domain 184 270 IPR004365 GO:0003676
Seca3g02990 618 Gene3D - 170 279 IPR012340 -
Seca3g02990 618 Pfam Replication factor-A C terminal domain 461 606 IPR013955 -
Seca3g02990 618 NCBIfam replication factor-a protein 1 (rpa1) 3 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g02990 618 SUPERFAMILY Nucleic acid-binding proteins 440 614 IPR012340 -
Seca3g02990 618 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Seca3g02990 618 FunFam Replication protein A subunit 427 614 - -
Seca3g02990 618 CDD RPA1_DBD_A 173 276 - -
Seca3g02990 618 FunFam Replication protein A subunit 4 114 - -
Seca3g02990 618 Gene3D - 284 424 IPR012340 -
Seca3g02990 618 FunFam Replication protein A subunit 283 422 - -
Seca3g02990 618 Pfam Replication protein A OB domain 300 398 IPR031657 -
Seca3g02990 618 PANTHER REPLICATION FACTOR A 1, RFA1 184 577 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g02990 618 SUPERFAMILY Nucleic acid-binding proteins 289 416 IPR012340 -
Seca3g02990 618 CDD RPA1_DBD_B 306 412 - -
Seca3g02990 618 FunFam Replication protein A subunit 170 279 - -
Seca3g02990 618 SUPERFAMILY Nucleic acid-binding proteins 172 280 IPR012340 -
Seca3g02990 618 Gene3D - 425 614 IPR012340 -
Seca3g02990 618 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca3g02990 618 CDD RPA1_DBD_C 456 613 IPR047192 -
Seca3g02990 618 Gene3D - 4 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02990 Seca-Chr3 53731287 53735523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02990 1 618 Core DNA Replication Machinery Family AT5G08020 69.467 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02990 K07466 - qsu:112017680 979.933