Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02981 ATGGGTGGCAATGGTAAGCACAGGTGGAAAATCTCCTTCCATCGTTCTTCCTCTCACTCAAAGCTGGAACCCAAGCACCCTCCCAAGGAGTTCCTATGCCCGATTTCCGGGTCATTAATGTCCGACCCGGTCGTCGTCGCTTCGGGTCAGACATTCGAACGCGTCGCCGTTCAAGTCTGTACGGATTTAAAGTTCATCCCCAACCTAGAAGACGGGTCCCGACCCGATTTCTCAACGGTCATCCCCAATTTGGCCATCAAAACGACGATTCTCAACTGGTGCGACAAATCCGGCACTCAACGCCCGCACGCACCGGATTACGCCTCCGTGGAGAGGGTCGTCCGGGAAGCAATGGCGGCGGCGCAGGAGGACCGAATTAGGGTTTCTGAGAGGGAGCTGCTGAAAGCCGTGGCGGATAACCCTCCGGTGATTTTCTCCCACGCCGCCACCGAGTTAGGGCCTCGAGTCAACCACTTCAACTCGGGGTCATCCTCGGAGGAATCGGTTATCATCGCGACGAGTCCAGGAACACCCTTGCCTCTCACGCTTCGCCCAACGTGCTTCTCTTCCTCTTCCTCCTCCTCCTGTGAGATAGAAATCCAAAACCCTAGCGTTCCAGCCTCGGAAGAAGAAGAGAAATTAGTGAAGAAGATGAAAAGCAACGAGGTGTTCGAGCAAGAAGATGGCGTGGTCTCGCTGAGGAGCATCACGAAGAACAGAGAAGAAGCTAGGGTTTCGCTCTGCACGCCGCGGATTCTTTCGGCACTGCGTCCGTTGATTCCATCGCGATACGTCGTCGTTCAGGTCAACGCTGTGGCTTCTCTGGTCAACCTTTCTCTGGAGAAATCGAATAAGGTGAGGATCGTGAGGTCAGGGTTCGTTCCTTATCTCGTCGACGTGTTGAAGGGAGGATTCAGTGAATCGCAGGAGCACGCTGCGGGCGCGCTCTTTAGCTTGGCTTTGAATGATGATAACAAGATGGCCATTGGAGTCCTCGGAGCGTTGCAGCCACTAATGCACGCGCTGAGGTCAGAGTCTGAGCGGACTCGGCATGACTCGGCGCTGGCGCTGTACCACCTCACGCTGGTTCAGAGCAACCGAGTCAAACTGGTGAAACTCGGGGTGGTCCCCACGCTGCTTTCGATGGTGATGACTGGGAACCTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCGGTGTCAATGGAGGGACGGACGGCGATGCTGGATGCCAACGCGGTGGAGTGTTTGGTGGGGTTGCTGAGGGGGAAGGAGTTTGACTCAGAGGCAACTCGGGAGAATTGTGTGGCGGCGTTGTATGCGCTGAGTCATGGGAGCTTGAGGTTCAAAGGTTTGGCGAAGGAGGCAAGGGCTGTGGAGGTTTTGAGGGAGATTGAGGAAACGGGAACAGAGAGGGCTAGGGAGAAGGCTCGGAGGGTGTTGCAGATGATGAGGGCTGCGGGAGATGATGAGGATCAAGATGGGTCTGAGTTTGATAGCCTTTTTGAATTGGGTGGGTTGGCTCGAACTCGCTACCGAGTTGCTGGTGGCAGGAGTACCAACCTTGTCAACACAACCACATTTTAG 1590 0.556 MGGNGKHRWKISFHRSSSHSKLEPKHPPKEFLCPISGSLMSDPVVVASGQTFERVAVQVCTDLKFIPNLEDGSRPDFSTVIPNLAIKTTILNWCDKSGTQRPHAPDYASVERVVREAMAAAQEDRIRVSERELLKAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIATSPGTPLPLTLRPTCFSSSSSSSCEIEIQNPSVPASEEEEKLVKKMKSNEVFEQEDGVVSLRSITKNREEARVSLCTPRILSALRPLIPSRYVVVQVNAVASLVNLSLEKSNKVRIVRSGFVPYLVDVLKGGFSESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGNLASRVLLILCNLAVSMEGRTAMLDANAVECLVGLLRGKEFDSEATRENCVAALYALSHGSLRFKGLAKEARAVEVLREIEETGTERAREKARRVLQMMRAAGDDEDQDGSEFDSLFELGGLARTRYRVAGGRSTNLVNTTTF. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02981 529 SUPERFAMILY ARM repeat 212 485 IPR016024 -
Seca3g02981 529 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Seca3g02981 529 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Seca3g02981 529 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Seca3g02981 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 106 IPR013083 -
Seca3g02981 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 329 IPR000225 GO:0005515
Seca3g02981 529 Gene3D - 208 487 IPR011989 -
Seca3g02981 529 SMART arm_5 240 280 IPR000225 GO:0005515
Seca3g02981 529 SMART arm_5 281 321 IPR000225 GO:0005515
Seca3g02981 529 SMART arm_5 402 445 IPR000225 GO:0005515
Seca3g02981 529 SMART arm_5 322 362 IPR000225 GO:0005515
Seca3g02981 529 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g02981 529 FunFam RING-type E3 ubiquitin transferase 9 101 - -
Seca3g02981 529 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Seca3g02981 529 FunFam RING-type E3 ubiquitin transferase 209 485 - -
Seca3g02981 529 PANTHER U BOX DOMAIN-CONTAINING 21 486 - -
Seca3g02981 529 SUPERFAMILY RING/U-box 14 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02981 Seca-Chr3 53487751 53489340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02981 1 529 U-box Gene Family AT5G65200 58.781 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02981 - - gmx:100815075 778.089