Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02970 ATGCATGCAACAGTGCAGCCAGGTGGCCGATCTCCTAAGCCAATGAGTAGTCCAACATCAACATCACAGTTAAAATCTGTTTCAGATAGTGTCCAGAACAGTACTTCTTCATTTCCTTCTCACAGTAAGGGGAGGAAAAGGGAAAGGGTAGATCAAGGCTCTGAGCCTGTCAAGCGAGAACGTTCAACAAAAATTGAAGATGGAGATTCTGGTAATTTTAGGCATGATAACATTTTGAAGACAGAAATTTCTAAAATTACTGAAAAGGGAGGTCTTTTTGATACTCAAGGAGTTGAGAAATTAGTACAGCTGATGGTTCCTGATAGAAATGGGAAGAAGATAGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTTATTGCAGCAACAGATAAATTTGATTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTACTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGGTTGGTGATGGTATTGGGTCCAGGGATGGTGATAAATCTGTTGAGGAATTTCTCTTGGTGTTACTTCGGGCACTTGATAAGCTTCCAGTGAATCTTCAGGCTCTACAGATGTGCAACATCGGCAAATCTGTGAATCATTTGCGAACCCATAAAAACACTGAAATTCAGAGGAAAGCAAGAGGTTTAGTGGACACATGGAAAAAACGGGTTGAAGCTGAAATGAATATAAATGATGCAAAATCTGGTTCTGGTCCCACCGTTGCCTGGCCTGCCAAGTCACGTCTTCCTGATGGTGGTCAAGGTGGGAATAGACATTCAGGTGCGTCATCTGATGCTGCCATGAAAAGTTCAGTTACACAACTTTCTGCATCCAAAATTGCCTCTGTTAAGATTGTCCAGGGAGATAATGCTACTAGATCTGCATCAACATCTGCATTTCTAGGGCCTGCAAAGTCAGTGCCGTCACCTGCATCAGCAACAATGAACTTAAAAGATGGACAGCCTCGTGTTACTGCTGTCAGTGGCGGTTCTGATCATCCTATGGCAAATGCTAGGGATGAGAAAAGTAGTAGTTCTAGCCAATCTCACAACAATAGTCAATCTTGTTCTAGTGACCATGCTAAAATTGGGGGTCTTTCAGGAAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGAAAATAAGAGATCACGAGGCTCTTCAAGACATCGGAAATCTATTAATGGATTCTCAGGTTCAGCTCTATCTGGAGGGCAAAGGGAAACTGGATCAAGTAGGAATTCCTCCTTGCACAAAAAATTAACTTCAGAGAAAATATCTCAGTCTGGATTAATGGAAAAAACAGTTGATGATACTTCTCTTGAGGGGAATACACCCAAGCTCATTGTTAAAATTCCAAACCAGGGTAGAAGTCCCACACAAAGGGCCAGTGCTGGTTCTCTTGATGATCCTACAATCATGAATAGTCGAGCCTCTTCTCCTGTCCTTTCAGAAAAGCATGATCAGTTTGATCACGTCTCAAAGGAAAAGAGTGACTTATATCGAGCCAATATTGGCTCAGTTATTAAAACTGAATCTTGGCAGAGTAATGATTTCAAAGATGTATTGACTGGCTCTGATGAAGGTGATGGATCGCCTGCTGCAGTTACTGATGAAGAGCGCTGTAGGACAGGCGATGATTGTAAGAAAACATTCGAAGTATCAAAGGCTGCTTCCTCATCATCTGGAAATGAAAACAAAGCTGGGACTTTGCATGATGCTTCTTACAGATCCATAAATGCTTTAATAGAAGGTGTTAAGTACTCTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGAAGAGATCTTGAAGTCTAACTTGATAACTCCAGCTGGATTTCCAGAGAGAAACACTACTGCTATTGAACAGTTGTGCACAGGGAATGGTGTAGTCAAGTCCTCTGAAGAAAATCTTGTCCGGGGTGAGTGTCAATCAAATAATGGTCTTGATTCTGAACAAAAGAATCAGGGTTCTACGTCAGGTGATTTAGGGATGAATGATGATAATAATTCTGATTCTCGGGCATCTGTAGGGAACGCTTCAAGAGAGCTAAATGAGCAAATTAATGCATGCAGTATGGATTTGAAACATGTTACTGAGACTAACATAGAAAGCAAAGGAAAATTAAATGAAAAACCTATTCCTACTCCATTTGGTGGTCTTCCTGAAAGCAGCACTGTGCAAGAAGCTAGAGATGGTGACAGTAGTGAGCAGCTTAAGGAGAAGGCTGTCAGGGGAGTGAATGCTGGTGAAATTCTTGATGTTAAGGTTAATGGTGTTGTGGGAGTGGAGGTGGAAGAAATTGAAAAATTGCCACGTGCCTCTGTGGAAGTGAATGTAAAGGGTGATAACTGTACTACTGAAGGATCAAGCGGGGATGGACAGACAGCTCAGAAGCCTTCTGCCATTCTTATGCAATGTGATTCAGCAAGAGGAACAGATGAGAATGTACTCCATTCTTGTGTTGATAAGGTTTCTGAAGATGCCAATGAACGGGAATATAAAAAAACTCATGATATGGCTACCGAGAACCATGTTAGTCAGTCTAAAAAACAAAAAAATGAGTGTGAAAGCGATGCCTTAATGATGCCTGAGAGTAAAGGTTTATGTTCCAGTGCGACTGGTTTTGCTGCTGAACGTGTGGGGGAGAATTCAGAAATGAAAGAGGTTCATGACCAAGATGTTGGACTGATACTTAACAAAGCTTCATCTAGCTTTCGTTCACAAGAAATGGACAAGCATCTGGATTCTAAAGGATCAAAATTGACTGCCATGGAAGTGGAAGAGGCTGAGGAATGCACCTCTACCACTGCGGATGCTTCTTCCATGTCTGCTGCTGCTGCTTTATCAGATGCGGATGCAAAGATTGAATTTGATTTAAATGAAGGGTTTAATGCAGATGATGGAAAATGTGGTGAGTTCAACAGCATTACCACTTCTGGATGTGCCCCTGCTGTTCGATTGATTAGTCCTGTACCATTTCCTGCTTCATCTATGTCTTGTGGTATTCCTGCCTCAATCACTGTGGCTTCTGCTGCAAAGGGGCCCTTTGTACCACCTGAAGATTTATTGAGAAGTAAAGGTGAACTTGGTTGGAAGGGATCAGCGGCCACTAGTGCATTCCGGCCAGCTGAGCCCCGGAAAGTTATGGAAATGCCTCTTGGTACACAAACTACCCCTATTCCTGATGCTGCAGCTGGAAAGCAGAGTCGACCACCGTTGGATATTGACTTAAATGTGCCTGATGAAAGAATACTTGATGATGTTTCTTCTCAAAATTGTGCTCGTCACACAGATGTTGTATCTCTTGCAGCTGATGGTCATGAGCAAGTATGCAGTAAGACGGCTTCACCTGTTCGGTGCTCTGGAGGGCTTGGTCTTGACTTGAACCAAGTGGATGAAGCTTCTGATGCGGGTAATTGCTCCATGAGCAGTAGTCATAAAATAGATGTACCACTTATGCAGGTGAAATCATCATTTAGTGGTCCTCCAAGCAGAGAAATGAGTGTCCACAGGGACTTTGATTTGAACAATGGACCTTCAGTTGATGAAGTTACCACTGAACCATCTTTGTTCTCTCAGCATGCCAGGATCAGTGTGCCATCTCAACCACCTGTTTTCGGACTTAGGATGAGTACTGCAGAGCCAGGGAACTTCTCTTCATGGCTTCCTTCTAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCATCCCTTTTCTATTGTTGCTCCTAATGGGCCACAAAGATTGTTGACTCCTGCCTCTGGTGGCAACCCATTTGGATCTGATATTTATAGGGGGCCAGTATTGTCATATCCATCTGCTCCATTTGAATATCCTGTCTTCCCTTTTAATTCCAGCTTTCCTCTTCCATCAGCATCATTTTCTGCTGGACCAACTACTTATGTATACTCAACGCCAGGTAGTCGGCTTTGCTTCCCTGCTGTGAATTCACAGTTAATGGGGCCTGCTGGCACAGTTTCATCGCATTACCCTAGGCCTTACGTTGTTGGCCTTCCAGATGGTAGCAATAGTAGTAGTAGTGGTGCTGAGACCAGTAGGAAATGGGCTAGGCAGGGTTTAGATCTTAATGCTGGACCTGGAGGTTCAGACATAGAGGGGAGAGATGAGAGCTCATCTCTTCCATCAAGGCAACTTTCTGTTGCCTGTTCACAGGCCCTAGCTGAGGAGCATGCAAGGATTCAGCTGGCTGGTAGTGTTCATAAGAGGAAGGAGCCTGATGGTGGCTGGGATGGCTACAAGCAATCCTCATGGCAATAG 4332 0.4356 MHATVQPGGRSPKPMSSPTSTSQLKSVSDSVQNSTSSFPSHSKGRKRERVDQGSEPVKRERSTKIEDGDSGNFRHDNILKTEISKITEKGGLFDTQGVEKLVQLMVPDRNGKKIDLASRSLLAAVIAATDKFDCLSQFVQLRGLPVLDEWLQEVHKGKVGDGIGSRDGDKSVEEFLLVLLRALDKLPVNLQALQMCNIGKSVNHLRTHKNTEIQRKARGLVDTWKKRVEAEMNINDAKSGSGPTVAWPAKSRLPDGGQGGNRHSGASSDAAMKSSVTQLSASKIASVKIVQGDNATRSASTSAFLGPAKSVPSPASATMNLKDGQPRVTAVSGGSDHPMANARDEKSSSSSQSHNNSQSCSSDHAKIGGLSGKEDARSSTAMSENKRSRGSSRHRKSINGFSGSALSGGQRETGSSRNSSLHKKLTSEKISQSGLMEKTVDDTSLEGNTPKLIVKIPNQGRSPTQRASAGSLDDPTIMNSRASSPVLSEKHDQFDHVSKEKSDLYRANIGSVIKTESWQSNDFKDVLTGSDEGDGSPAAVTDEERCRTGDDCKKTFEVSKAASSSSGNENKAGTLHDASYRSINALIEGVKYSEADDVGMNLLASVAAEEILKSNLITPAGFPERNTTAIEQLCTGNGVVKSSEENLVRGECQSNNGLDSEQKNQGSTSGDLGMNDDNNSDSRASVGNASRELNEQINACSMDLKHVTETNIESKGKLNEKPIPTPFGGLPESSTVQEARDGDSSEQLKEKAVRGVNAGEILDVKVNGVVGVEVEEIEKLPRASVEVNVKGDNCTTEGSSGDGQTAQKPSAILMQCDSARGTDENVLHSCVDKVSEDANEREYKKTHDMATENHVSQSKKQKNECESDALMMPESKGLCSSATGFAAERVGENSEMKEVHDQDVGLILNKASSSFRSQEMDKHLDSKGSKLTAMEVEEAEECTSTTADASSMSAAAALSDADAKIEFDLNEGFNADDGKCGEFNSITTSGCAPAVRLISPVPFPASSMSCGIPASITVASAAKGPFVPPEDLLRSKGELGWKGSAATSAFRPAEPRKVMEMPLGTQTTPIPDAAAGKQSRPPLDIDLNVPDERILDDVSSQNCARHTDVVSLAADGHEQVCSKTASPVRCSGGLGLDLNQVDEASDAGNCSMSSSHKIDVPLMQVKSSFSGPPSREMSVHRDFDLNNGPSVDEVTTEPSLFSQHARISVPSQPPVFGLRMSTAEPGNFSSWLPSSGNTYSAVTISSIMPDRGDHPFSIVAPNGPQRLLTPASGGNPFGSDIYRGPVLSYPSAPFEYPVFPFNSSFPLPSASFSAGPTTYVYSTPGSRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLPDGSNSSSSGAETSRKWARQGLDLNAGPGGSDIEGRDESSSLPSRQLSVACSQALAEEHARIQLAGSVHKRKEPDGGWDGYKQSSWQ. 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02970 1443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 97 232 IPR035441 -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 235 274 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 1 74 - -
Seca3g02970 1443 SMART TFS2_5 151 230 IPR003617 GO:0005634
Seca3g02970 1443 MobiDBLite consensus disorder prediction 1420 1443 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 395 446 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 1377 1404 - -
Seca3g02970 1443 CDD TFIIS_I 153 229 - -
Seca3g02970 1443 ProSiteProfiles TFIIS N-terminal domain profile. 145 231 IPR017923 -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 717 745 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 344 365 - -
Seca3g02970 1443 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1443 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 41 74 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 458 487 - -
Seca3g02970 1443 Pfam TFIIS helical bundle-like domain 179 228 IPR017923 -
Seca3g02970 1443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 242 IPR035441 -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 296 501 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 651 688 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 296 325 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 1420 1434 - -
Seca3g02970 1443 MobiDBLite consensus disorder prediction 10 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02970 Seca-Chr3 53254607 53258938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca3g02970 Med26 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02970 - - ccaj:109810746 2193.7