Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02967 ATGGCGAGGATAAAGGTGCACAAGTTGAGGAACAAAACCAAGGCGGAGCTGCTAAACCAATTCAAGGATCTAAAGGCAGAGCTCGGTTTACTCCGAGTGGCCAAGGTCACTGGTGGCGTTTCCAACGAGGTCTCCAAGATCAAGGTGCTAAACCAATATTACTTGATTTCATTTAATCATTGA 183 0.4536 MARIKVHKLRNKTKAELLNQFKDLKAELGLLRVAKVTGGVSNEVSKIKVLNQYYLISFNH. 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02967 60 Pfam Ribosomal L29 protein 8 49 IPR001854 GO:0003735|GO:0005840|GO:0006412
Seca3g02967 60 NCBIfam 50S ribosomal protein L29 9 49 IPR001854 GO:0003735|GO:0005840|GO:0006412
Seca3g02967 60 SUPERFAMILY Ribosomal protein L29 (L29p) 4 50 IPR036049 GO:0003735|GO:0005840|GO:0006412
Seca3g02967 60 Gene3D - 1 53 IPR036049 GO:0003735|GO:0005840|GO:0006412
Seca3g02967 60 PANTHER 60S RIBOSOMAL PROTEIN L35 1 50 IPR045059 GO:0000463|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02967 Seca-Chr3 53195769 53195951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02967 1 52 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 69.231 4.77e-20 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02967 K02918 - gmx:100789845 80.8777