Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02966 ATGAGCCTAAAATCCATCTGGGCATTTTTCATTGTCATCTTTTTGCTTTTTCTAAGTGCCAATTCAGAGGAAGAAGAGGTGAGGAAGTCTCTAGTCACGTTCATGAAAAAACTTGCACCAGGGAATGGACAAAGAGATGCTGCCATGTGGGGTTGGAACCTTACATCAGATCCCTGCATTGGTAACTGGCATGGTGTGACCTGCTATTCAGGTAACCAATATGTGAAGAGTATAATTCTTGAGGGATTCAATTTCAGTGGGGTTGTAGAGGCTAGTTCCCTTTGCATGGCAAAGTCTCTTCAAATCCTTAGCCTGAGGAACAACAATTTACATGGTTTGATATCAGAGGATATAGGAAATTGCAAGCTCTTGACTCACTTGCTTTTAAGTGGGAATAAATTCTCTGGAGATCTTCCTATTGCAATTGCTGAACTAAGGAACATGAAGAGGCTTCATGTTTCAGAGAATTACTTCACTGGAGAGCTTCCTAATATGGTTCATATTTCAAGCTTGATATCCTTTCTTGCTGAAAACAACAACTTCACAGGGGAGATTCCTGATTTTGACTTCTCCAACCTTGAAGCGTTTAATGTCTCCAACAACAATTTAACAGGCCTTGTTCCTGATGTCAGAGGCAGATTCCATGCTGATAGTTTTTCTGGTAATCCTAATTTATGTGGAAAACCACTTTCAAAGGCATGTCCACCTCCAAATATAAAGAAAGTCAAAAAATCATTCCTTGATGACTTGCCCATTTATTCAGGTTACATAATTCTTGGTTTTATTGTCCTTCTTTTCTTGATCTTCAAATTGTTAAGTAAATTCAAGACCAAAGAAAAAGCATTAGATGTTGAGGATAAGAGGGAAATGGGACAAGAAACTAGTGGTGGTGACAAGCCTAGTGAAACTTCCATTTCCATTGGATCAAAGAATTGGTTGAATGGCATTGGGATTAGATCAGAGTATTCATTGACATCTGGGGAAAGTGGGATGACTACATCAGGTCTTGTTCTTGTTTCAAGTAGAAGACTAAGGGGAATGCAATTTGAGGAGTTGCTGAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCATGGAAGTCTCTACAAGGTTATGCTTGACAATGGGGTGCTTTTGGCAGTCAAGAGGATCAAGGATTGGGGAATCTCAAAGCAAGACTTTCAGAGGAGGATGAACCTGATAACTCAAGTGAAGCATCCAAGGGTAATGCCACCTGTTGCATACTATTGCTCCCAGCAAGAGAAGCTCCTGGCCTATGAATATCTGCAAAATGGTAGCCTCTTCATGTCACTCTATGTTTCAGGATCTCAAAATGGCAACTCTTTAGATTGGGGGAGCAGACTAAATGTTGCTGCTAAGGTATCTGAGGCTTTAGCATATATGCATGAGGAGCTTCATGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGTAACATATTGTTTGACAAAAATATGGATCCATGCATAAGTGAATATGGCCTCATGGTGGCTGAAAACCAAGTTCAATATGTCATTTCTCACAACAAAAGCCCCAAAAACAGGAATCTGAATGGAGCCATGTTTAAAGCTGATGTATATGCCTTTGGTGTGATGCTTCTTGAGCTGCTGACAGGGAAAGTAGTTAAAAATGATGGATTTGATCTGGTTAAATGGGTGAATTCAGTGGTGAGAGAGGAATGGACTGTGGAAGTTTTTGACAGGTCTCTAATCTCTCAAGGTGCTTCTGAAGAGAGGATGGTGAATTTGTTGCAGGTAGCATTAAAATGCATAAATCCTTCTCCAAAGAATAGGCCAAGTATGAGCCAAGTTGCAGAGATGACAAATGCATTGAAAGAGGAAGAAGAAAAATCCATATCCTTTGACACATGA 1893 0.401 MSLKSIWAFFIVIFLLFLSANSEEEEVRKSLVTFMKKLAPGNGQRDAAMWGWNLTSDPCIGNWHGVTCYSGNQYVKSIILEGFNFSGVVEASSLCMAKSLQILSLRNNNLHGLISEDIGNCKLLTHLLLSGNKFSGDLPIAIAELRNMKRLHVSENYFTGELPNMVHISSLISFLAENNNFTGEIPDFDFSNLEAFNVSNNNLTGLVPDVRGRFHADSFSGNPNLCGKPLSKACPPPNIKKVKKSFLDDLPIYSGYIILGFIVLLFLIFKLLSKFKTKEKALDVEDKREMGQETSGGDKPSETSISIGSKNWLNGIGIRSEYSLTSGESGMTTSGLVLVSSRRLRGMQFEELLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKQDFQRRMNLITQVKHPRVMPPVAYYCSQQEKLLAYEYLQNGSLFMSLYVSGSQNGNSLDWGSRLNVAAKVSEALAYMHEELHESGIAHGNLKSSNILFDKNMDPCISEYGLMVAENQVQYVISHNKSPKNRNLNGAMFKADVYAFGVMLLELLTGKVVKNDGFDLVKWVNSVVREEWTVEVFDRSLISQGASEERMVNLLQVALKCINPSPKNRPSMSQVAEMTNALKEEEEKSISFDT. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02966 630 ProSiteProfiles Protein kinase domain profile. 354 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02966 630 SUPERFAMILY Protein kinase-like (PK-like) 358 614 IPR011009 -
Seca3g02966 630 PANTHER OS05G0588300 PROTEIN 9 620 - -
Seca3g02966 630 MobiDBLite consensus disorder prediction 286 306 - -
Seca3g02966 630 Pfam Protein kinase domain 360 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02966 630 SUPERFAMILY L domain-like 54 230 - -
Seca3g02966 630 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Seca3g02966 630 Gene3D Ribonuclease Inhibitor 190 237 IPR032675 -
Seca3g02966 630 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Seca3g02966 630 Gene3D Transferase(Phosphotransferase) domain 1 429 629 - -
Seca3g02966 630 Gene3D Phosphorylase Kinase; domain 1 333 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02966 Seca-Chr3 53187919 53190268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02966 1 621 Receptor kinase-like Gene Family AT5G24100 31.066 4.93e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g02966 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02966 - - gmx:100787974 932.554