Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02963 ATGGTGGCAAGATCATACATCAATTTGTTGGACTTGGTGTCAGGGGATATTTTAAATTTCCCTCAAATGACTGTTCCAGGAGTTATGTCTGATTTAGATGGTAAACAAAGTAATGATGATGATTCAAATACTGTCTCATCAGATTCAGAACAGCGCCGCAAGATGATTATAGTAGCAAATTTTCTTCCTCTCAATGCTAAAAAGGATGACATATCTGGCAGATGGTGCTTTAGTTATGATGAAGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTGCTGATACAGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGAGAAAGTTTCTGTTCAGTTGCTGGAGGAATTCAATTGCTTGCCTACTTTTATTCCTTCAGACATCCAGGAACTGTTCTATAATGGATTCTGCAAGCAATATTTGTGGCCTCTATTCCATTACATGCTGCCCATGTATCCAGGCTATTGCAATCGCTTTGATAGGTCACTATGGCAGGCTTATGTGTCTGCTAACAAGATATTTGCAGATAGAGTCATGGAGGTCATTAATCCAGAAGATGATTTTGTATGGGTGCACGATTATCATCTCATGGTTCTTCCAACATTTCTGCGGAAGAGGTATAGTCGTGTCAAACTAGGCTTTTTCCTCCACACTCCATTTCCTTCATCGGAAATTTATCGAACTCTACCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGTAGATTTAATTGGCTTTCAGACATTTGATTATGCGCGCCATTTTTTGTCCTGCTGCAGTCGAATGCTTGGATTGAAATATGAATCCAAGAGGGGTTACATTGGGCTCGAATACTTTGGCCGTACAATATTCATTAAAATATTGCCTGCTGGGATTCATATGGGCCGCATTCAATCGGCCTTAAATCACCCTTGTACTTCTCTCAAAGTTAGAGAAATCTATGATCAGTATGAGGGGAAAAAACTTATCATTGGTGTTGATGATATGGACATATTCAAAGGTGTAAGTTTAAAGTTGTTAGCTATAGAACAACTCCTGCAGCAACTTCCACAACTACAGGGTGAATTGGTGCTGGTCCAAATTTTAAATCCCCCAATGAGTACCGGCAAAGAAGTCGAGGAGGCCTACATTATTGCTAAAAGGATAAACGAAAGGTTTGGTTTTCCAGGTTATGAACCTGTGGTCATCATTGATAGTCATGTTTCTTTCTATGAGAAGACAGCATATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGGGATGGTATGAACTTGGTTCCATACAAATATATTGTCTGTAGACAGGGGAGTTCTAATATTGATGAAGCCTTAGATATTGCTTCTGATTCCCTTCGTACAAGTGCGCTTGTTGTTTCTGAGTTCATAGGTTGTTCACCATCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGATATTACTGCTGTAGCTGAAGCACTAAAGTTGGCTATCTCAATGCGCAATAGAGAGAAACAGTTCCGGCATGAGAAGCACTACCGATATGTTAGTTCTCATGATGTGGCTTACTGGGCCCAACGTTTTGAACAAGATCTTGAGTTCTCATGCAGGGATCACTATAGGAAACGTTGCTGGGGCATTGGCTTTGGCCTGAATTTTAGAATTTTGTCCCTCTCTCCTAATTTCAGGAAGCTATCCATAGACCACATTGCCTCTGCTTATAAAAGGACAACTTCCAGAGCAATCTTTTTGGATTATGATGGTACAATTGTACCTCAAACTTCCATTGTTAAATCCCCCACTCCTGAAGTCATATCCGTGCTAAATAATCTCTGCAGTGATCTTAACAACACTGTGTTTATTGTTAGCGGCAGGGGGAAAACTTCATTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCACAAGGTGGGGGAAACAATCAAGTTGGAAAATGAGTCATATAAGCACAAACTTTGCATGGAAAAGCATTGCGGAACCAGTCATGAGATCATATACTGAGGCGACAGATGGCTCCTATATAGAGACCAAAGAAAGTGCCTTGGTATGGCATTATTACAATGCCGACCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCATCTTGAAAATGTACTTGCAAATGAGCCTGTAGTTGTTAAAAAGGGACAGCACATTGTTGAAGTCATGCTTCAGGGGGTTACTAAAGGGTCAGTTGCACAGGAAGTTCTGTCTACACTAACCAGTAATGGCAAATCGCCATATTTTGTGCTGTGCATTGGGGATGATAGATCTGATGAGGATATGTTTGAGAGCATATTAACCAAACCTTATAGTGCAACTTCCTCTTCAGCACCGGAAATCTTTGCATGTACTGTTGGACAGAAACCAAGCAAAGCTAGATACTACCTGGATGATACTGTGGATGTGATGATGTTACTTGAGGGTCTGGTTACCGCATCAGGGTCTAAATCAAAAGGTTCTACAGATGCCCCTTCTGAAAAAACAGAATTCTATTTTGAAAATTTGCTTGAAATGTAG 2577 0.4059 MVARSYINLLDLVSGDILNFPQMTVPGVMSDLDGKQSNDDDSNTVSSDSEQRRKMIIVANFLPLNAKKDDISGRWCFSYDEDSIFWQLKDGLSADTDVVYVGSLKVDVDASEQEKVSVQLLEEFNCLPTFIPSDIQELFYNGFCKQYLWPLFHYMLPMYPGYCNRFDRSLWQAYVSANKIFADRVMEVINPEDDFVWVHDYHLMVLPTFLRKRYSRVKLGFFLHTPFPSSEIYRTLPVRGEILKALLNVDLIGFQTFDYARHFLSCCSRMLGLKYESKRGYIGLEYFGRTIFIKILPAGIHMGRIQSALNHPCTSLKVREIYDQYEGKKLIIGVDDMDIFKGVSLKLLAIEQLLQQLPQLQGELVLVQILNPPMSTGKEVEEAYIIAKRINERFGFPGYEPVVIIDSHVSFYEKTAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSSNIDEALDIASDSLRTSALVVSEFIGCSPSLSGAIRVNPWDITAVAEALKLAISMRNREKQFRHEKHYRYVSSHDVAYWAQRFEQDLEFSCRDHYRKRCWGIGFGLNFRILSLSPNFRKLSIDHIASAYKRTTSRAIFLDYDGTIVPQTSIVKSPTPEVISVLNNLCSDLNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFTRWGKQSSWKMSHISTNFAWKSIAEPVMRSYTEATDGSYIETKESALVWHYYNADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIVEVMLQGVTKGSVAQEVLSTLTSNGKSPYFVLCIGDDRSDEDMFESILTKPYSATSSSAPEIFACTVGQKPSKARYYLDDTVDVMMLLEGLVTASGSKSKGSTDAPSEKTEFYFENLLEM. 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02963 858 Pfam Glycosyltransferase family 20 54 535 IPR001830 GO:0003824|GO:0005992
Seca3g02963 858 Pfam Trehalose-phosphatase 585 818 IPR003337 GO:0003824|GO:0005992
Seca3g02963 858 NCBIfam trehalose-phosphatase 582 830 IPR003337 GO:0003824|GO:0005992
Seca3g02963 858 MobiDBLite consensus disorder prediction 29 50 - -
Seca3g02963 858 CDD HAD_TPP 583 824 - -
Seca3g02963 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 535 - -
Seca3g02963 858 FunFam Alpha,alpha-trehalose-phosphate synthase 308 519 - -
Seca3g02963 858 Gene3D Glycogen Phosphorylase B; 45 306 - -
Seca3g02963 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 581 698 - -
Seca3g02963 858 CDD GT20_TPS 54 535 IPR001830 GO:0003824|GO:0005992
Seca3g02963 858 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Seca3g02963 858 Gene3D - 584 816 IPR023214 -
Seca3g02963 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 23 830 IPR001830 GO:0003824|GO:0005992
Seca3g02963 858 NCBIfam HAD-IIB family hydrolase 583 784 IPR006379 -
Seca3g02963 858 SUPERFAMILY HAD-like 582 830 IPR036412 -
Seca3g02963 858 Gene3D - 664 744 - -
Seca3g02963 858 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 711 842 - -
Seca3g02963 858 FunFam Trehalose-6-phosphate synthase 2 665 744 - -
Seca3g02963 858 Gene3D Glycogen Phosphorylase B; 307 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02963 Seca-Chr3 53060073 53063042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02963 1 856 Trehalose Biosynthesis Gene Families AT1G23870 65.593 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02963 K16055 - gmx:100812031 1387.47