Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02960 ATGAATAGAACGCACTCTCCTTCTTGTAATCCTTCGTTTCTAGATTGTGCTACCCTCAACAACCACGAACGCCAAGCTTGGTTTAGACGCACAAGAGTTCTTGCTAATTGTGATGCTCTCAATAGTAAAAACCACTTTCAGTTTGGATTGTTCGCTGATGCTTTTACTGATCACGTTTCTTCCTCTAGATTCATCCAAAAATATTTTTATTGTCTCTGGTGGGGTCTAAAAAATCTTAGTTCATATGGACAAAATCTTCAGACCAGTACTTACAGTGGTGAAACATTATTTTCAAGTTTCATTTGCATTGCAGGCCTTATCCTGTTTGCGCATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCAACTGCAAGACTTGAAGAGTGGAGACTCAAACAAAAAGATACAGAAGAATGGATGAATCACCGTCAACTACCACCAGAATTGCAAGAACGTGTTCGCAGGTTTGTTCAATATAAATGGCTTACCACTAGAGGTGTTGATGAAGAAGCCATTTTACGCGCTTTGCCCCTGGACCTTCGCCGACAGATTCAGAGGCATCTCTGTCTTGATATTGTTCGTCGGGTTCCTTTCTTTGGCCAAATGGATGATCAGCTCCTAGATGCTATATGCGAACGTCTTGTTTCATCCCTGAACACAAAAAACTCATACATTGTTCGGGAAGGTGATCCAGTGAGAGAAATGCTATTTATCATTAGAGGACAAGTAGAGAGCTCTACCACTGATGGTGGAAGATCAGGATTCTTCAACTCTATCACCCTCAGACCTGGTGATTTTTGTGGAGAAGAATTGCTGACATGGGCTTTGATGCCTACTTCTAGTCTTAACCTCCCATCTTCCACTAGAACAGTGAAGACCCTTACTGAAGTTGAAGCATTTGCTCTTAGAGCTGAGGATCTCAAATTTGTGTCCAACCAGTTTAAGCGCCTTCACAGCAAGAAACTCCAACATGCTTTTAGGTACTATTCCCATCAATGGAGGGCTTGGGGGGCTTGCTTTATACAAGCTGCTTGGAGACGTCACCGCAAGAGAAAATTGGCAATGGAGTTGTTAGAGAAAGAGAACTTGTACTATTCAAATGTGATGGAGCTAGAAGATGAGGAAGAAATAAGTGCTGGAGAGAGTTCAATGGGGGATAGTGCAAGCCATATACAGAATCTTGGGGCTACAGTTTTGGCTTCTAAATTTGCTGCAAACACTAGAAAAGGGGCAGTTAAAAAAGTAACAATACCTGATGCTAGCAGTTTAAAGATGCCCAAGATGTTCAAGCCAACGGAGCCTGATTTCTCAACATTCCATGAAGATTAG 1332 0.4174 MNRTHSPSCNPSFLDCATLNNHERQAWFRRTRVLANCDALNSKNHFQFGLFADAFTDHVSSSRFIQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLKQKDTEEWMNHRQLPPELQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKNSYIVREGDPVREMLFIIRGQVESSTTDGGRSGFFNSITLRPGDFCGEELLTWALMPTSSLNLPSSTRTVKTLTEVEAFALRAEDLKFVSNQFKRLHSKKLQHAFRYYSHQWRAWGACFIQAAWRRHRKRKLAMELLEKENLYYSNVMELEDEEEISAGESSMGDSASHIQNLGATVLASKFAANTRKGAVKKVTIPDASSLKMPKMFKPTEPDFSTFHED. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02960 443 Gene3D Jelly Rolls 197 317 IPR014710 -
Seca3g02960 443 Pfam Cyclic nucleotide-binding domain 222 309 IPR000595 -
Seca3g02960 443 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 437 - -
Seca3g02960 443 SMART cnmp_10 199 327 IPR000595 -
Seca3g02960 443 CDD CAP_ED 199 330 IPR000595 -
Seca3g02960 443 SUPERFAMILY Voltage-gated potassium channels 63 162 - -
Seca3g02960 443 SUPERFAMILY cAMP-binding domain-like 128 324 IPR018490 -
Seca3g02960 443 Pfam Ion transport protein 62 126 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g02960 443 Gene3D Helix hairpin bin 125 190 - -
Seca3g02960 443 FunFam Cyclic nucleotide-gated ion channel 1 197 315 - -
Seca3g02960 443 FunFam Cyclic nucleotide-gated ion channel 1 126 190 - -
Seca3g02960 443 ProSiteProfiles cAMP/cGMP binding motif profile. 199 282 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02960 Seca-Chr3 52901518 52904522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02960 1 437 Ion Channels AT3G48010 72.260 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02960 K05391 - gmx:100783672 821.231