Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02953 ATGATTCCTAACTCTAAACTCAGATTAACAGATCGTCGTCCTCTATCATTCCCAGCTGTCTATCCCTGCCAAGCCATATCTCTCTGCAGTCTGATTGCCTCTCTAATCACACTTGCCCAAACCATATGCAGTTTCTCATCAAATTCTTTCCCTACACAAAAACCAAATGTCAGAGAAACGATTCGTCAAGTCACAATTCTTCTTATGTTCTTCCAAGAAATTCGGGACAGCAGTTCTGTCATCCCCGACGCCGCCATCCTCCCCTGTTTCTCCAACCTCCACTTCTCCCTCCAGAAAATCCATTTCTTGATACAAGATTGCGCCCGCGAGGGCGCACGCCTCTGGATGCTCATGAAATCCCAAAACGTTGCCACGCAGTTTAGGATTCTCATCCGCGCCGTCGCCACCACCCTCGAAGCCTTGCCGCTGCACAGCATCGACGTCTGCTTAGAGGTGAAAGAGCTAATTGAATTACTCACCAAGCAAGCCAAAAAGGCCAAACTCGAACTCGACCCAAACGACGAACGCGAAGCCAAGCGAGTTCGTTCCGTTTTGAATCAGCTCGAAAGAGGAACCGAACCCGACGTGGACGCCATGAAACGAGTGCTTGATTATCTCGAAATTAAAACTTGGACTGATTGCAACAACGAGATCAAATTCCTCCAAGACGAATCTGAATCAAACGAGCAAGAGGTTCTGTTATTGAGTAGCTTAACAGGATTCATCTGTTACTGTCGAGTAGTCATATTCGAACCTTTCAATTTCCAACCTGAAGCCAGGTGCAGCACAGAGACGCTAAGCTGCGTAACACCGGATGATTTCCGGTGTCCAATTTCCCTAGAGCTTATGACGGATCCAGTAACCGTTTCCACTGGCCATACCTACAACCGAGCCTCAATTCAAAAGTGGTTAAAAGCAGGGAACATGACTTGTCCGAAAACAGGGGAAAGGCTAACAAACACAGAGCTGTTCCCGAACCTATCGCTCAAGAGGCTAATCCAAAGATTCTGTTACGATAACGGAATTTCAACAGCCAAGTCCCGAAGCATAGCCAGGACGGTAGAGCCTGGTGGTGCGGCAGCAGCACACGCCATGCAGTTCCTGTCCTGGTTTCTTGCTAGTAGGTTGGTGTTTGGAACAGAGGAACAGAAAAACAAGGCTGCTTACGAGGTTCGTTTGCTTGCAAGGTCCAACGTTTTCAATAGGGCGTGTTTGGCTGAAATGGGTATGGTGCCTCCACTGTTGGATCTTCTCTCCACGGATGATGCAGCCACGCAAGAGAACGCAATCTCTGCTCTTTTGAAGCTCTCAAAGCATTCCACCGGCCAGGAAGTTATCATGGAGAGTAGGGGTTTAGCACCGATCATTAAGGTTCTCAAAACAGGGCATAGTCTAGAAGCACGTCAAATCGCGGCTGCTACAATATTCTATCTTTCTTCGGTGAAAGAGTATAGAAAATTAATAGGGGAAAATCCAGAGGCAATTCCAGCTTTAGTGGAGATGATAAGGGAAGGAACAACTTGTGGGAAAAAGAACGCAGTGGTTGCGATTTTCGGGTTGCTTTTGCTTCGTAAGAATCGCTCCAAGGTGCTTGATGCTGGTGCTGTTCCTGTGGTTGTTGGGGTTTTAGCTTCTTCTTCGGACAAAGCTGATCTTGTCACTGATTGTTTAGCTGTTCTTGTAGCTTTAGCAGAGAGCGTGGAGGGAGCTCGTGCTATATTAGAAGCCTCTGCTTTGAATTTGGTCATTGGGGTTTTGCAATCTGCAACTTCGCGCGCAGGGAAGGAATACTGTGTGTCAATTTTGCTGTCACTGTGTGACAAAATTGGTGCAGAGGTGATAAGTGTTCTGGTTAAGGATCCTTTACTTATGCCTTTGCTTTATTCACTTGTTACGGATGGTACTCCTCTTGCGGCCAAGAAAGCACGCTCCCTCATCAATGTCTTACAAGAATTCAACGAGAAAAGGATTTCTGGATTGGTGGGTTCGTCTGTTTCGCACCAAAGATTGGTTCACTTATCTTGA 2025 0.4686 MIPNSKLRLTDRRPLSFPAVYPCQAISLCSLIASLITLAQTICSFSSNSFPTQKPNVRETIRQVTILLMFFQEIRDSSSVIPDAAILPCFSNLHFSLQKIHFLIQDCAREGARLWMLMKSQNVATQFRILIRAVATTLEALPLHSIDVCLEVKELIELLTKQAKKAKLELDPNDEREAKRVRSVLNQLERGTEPDVDAMKRVLDYLEIKTWTDCNNEIKFLQDESESNEQEVLLLSSLTGFICYCRVVIFEPFNFQPEARCSTETLSCVTPDDFRCPISLELMTDPVTVSTGHTYNRASIQKWLKAGNMTCPKTGERLTNTELFPNLSLKRLIQRFCYDNGISTAKSRSIARTVEPGGAAAAHAMQFLSWFLASRLVFGTEEQKNKAAYEVRLLARSNVFNRACLAEMGMVPPLLDLLSTDDAATQENAISALLKLSKHSTGQEVIMESRGLAPIIKVLKTGHSLEARQIAAATIFYLSSVKEYRKLIGENPEAIPALVEMIREGTTCGKKNAVVAIFGLLLLRKNRSKVLDAGAVPVVVGVLASSSDKADLVTDCLAVLVALAESVEGARAILEASALNLVIGVLQSATSRAGKEYCVSILLSLCDKIGAEVISVLVKDPLLMPLLYSLVTDGTPLAAKKARSLINVLQEFNEKRISGLVGSSVSHQRLVHLS. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02953 674 SUPERFAMILY ARM repeat 379 650 IPR016024 -
Seca3g02953 674 Coils Coil 149 169 - -
Seca3g02953 674 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Seca3g02953 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Seca3g02953 674 PANTHER U BOX DOMAIN-CONTAINING 60 649 - -
Seca3g02953 674 Gene3D - 351 658 IPR011989 -
Seca3g02953 674 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Seca3g02953 674 FunFam RING-type E3 ubiquitin transferase 346 660 - -
Seca3g02953 674 CDD RING-Ubox_PUB 271 323 IPR045210 -
Seca3g02953 674 SMART arm_5 398 438 IPR000225 GO:0005515
Seca3g02953 674 SMART arm_5 523 565 IPR000225 GO:0005515
Seca3g02953 674 SMART arm_5 439 480 IPR000225 GO:0005515
Seca3g02953 674 Pfam Armadillo/beta-catenin-like repeat 401 437 IPR000225 GO:0005515
Seca3g02953 674 SUPERFAMILY RING/U-box 266 343 - -
Seca3g02953 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 578 IPR000225 GO:0005515
Seca3g02953 674 Pfam U-box domain 271 340 IPR003613 GO:0004842|GO:0016567
Seca3g02953 674 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Seca3g02953 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02953 Seca-Chr3 52825732 52827756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02953 10 672 U-box Gene Family AT1G10560 39.219 1.04e-169 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02953 - - gmx:100810963 852.432