Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02952 ATGGGGATGGATATTGTCATTTCTTTGATCATCTTGTTTGTGGGGATTGCTATTTTGGTGTCCATCCATGTCTGCATCGTTGGGAGGGCTTTCAGTTATGGTGGAAGTGCTCCTCAAGGCCAGAGTAGCACCACCACCAAAACAATCTCTAGTGACCACCTGAAGAACCTTCCTTGCTTTAATTATGAGGAACCAGAGAAAGGGTGTGGCCTCCTGGATTGTGCTGTATGCTTGGAGAACTTCAAGGCTGGTGATGTGTGCAGGTTGTTGCCCAACTGCAGCCACAGCTTCCATGTGCAGTGCATAGACTCATGGATAGTCAAGACACCTTTTTGTCCTATTTGTAGAACATGGGTTCATTCCAGAGCAATGATGAAGGAAGAAAGTGTTGTTTCTGATAATGTAGAAATTGAAATAGCATAA 423 0.4444 MGMDIVISLIILFVGIAILVSIHVCIVGRAFSYGGSAPQGQSSTTTKTISSDHLKNLPCFNYEEPEKGCGLLDCAVCLENFKAGDVCRLLPNCSHSFHVQCIDSWIVKTPFCPICRTWVHSRAMMKEESVVSDNVEIEIA. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02952 140 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Seca3g02952 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 131 - -
Seca3g02952 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 121 IPR013083 -
Seca3g02952 140 FunFam RING-H2 finger protein ATL2K 49 122 - -
Seca3g02952 140 SMART ring_2 74 115 IPR001841 -
Seca3g02952 140 SUPERFAMILY RING/U-box 53 121 - -
Seca3g02952 140 Pfam Ring finger domain 73 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02952 Seca-Chr3 52802252 52802674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02952 49 121 C3H Transcription Factor Family AT4G30370 45.205 2.04e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02952 - - gmx:102662675 193.741