Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02951 ATGAAGGAAAGCAATGATGGGTTCGTGAGGGCTGATCAGATTGATCTGAAGAGCATAGATGAACAGCTTGAGAGGCACCTGAACAAGGCATTGATTATGGATAAAATGAAGCAGAAAGATGAGGATGGTTCTGATGATCATGCTCGTCACTCAACCTCTATTTCCACTTCCATTAAATTCAAAAGTGTAGCAGCACCTCCTCCTCCTGCTGCTGCTGCTATCTTCAAGAAGCAAAGAGAAGACTGGGAAATTGACCCTTCCAACCTTATCATCAAAAGTGTCATAGCTCGTGGCACTTTTGGCACTGTCCATCGTGGTATCTATGATGGCCAAGATGTTGCTGTCAAAATGCTGGACTGGGGTGAAGAAGGGCACCGGACAGAAGCTGAAATTGCTGCCCTCAGGTCAGCTTTTACACAAGAAGTTGTTGTTTGGCATAAACTTGAACATCCTAATGTCACTAAGTTTATAGGGGCAACAATGGGATCTTCAGAATTACAGATACAAACTGATAGTGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTGCGCTGAAATCTTACTTAATAAAGAATAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTATCTTCACTCTCAGAAAATTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGACAAGACACGCACAGTTAAAATTGCTGATTTTGGGGTTGCACGTGTTGAAGCCTCAAATCCCAATGACATGACTGGGGAGACTGGTACACTTGGTTACATGGCTCCTGAGAGTGGAAGCATTACTGCAAAGGCTTGCAATGTCCAAACTCCAAAACATATTCCATCTGATTGGAAATGGGTTCTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAGATTACTTCAGCTGTTGTTCGCCAGAATCTGAGACCAGAAATACCACGATGTTGCCCAAGTTCTCTGGCAAATGTAATGAAGAGATGCTGGGATGCTAATCCTGATAAACGGCCTGAAATGGATGAGGTAGTTTCCATGCTGGAGGCTATTGACACATCCAAGGGTGGAGGTATGATCCCTGATGATCAGCAGCAAGGTTGTCTTTGCTTTCGTAAGCACAGAGGGCCGTGA 1248 0.4375 MKESNDGFVRADQIDLKSIDEQLERHLNKALIMDKMKQKDEDGSDDHARHSTSISTSIKFKSVAAPPPPAAAAIFKKQREDWEIDPSNLIIKSVIARGTFGTVHRGIYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVVVWHKLEHPNVTKFIGATMGSSELQIQTDSGLISMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPESGSITAKACNVQTPKHIPSDWKWVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPDDQQQGCLCFRKHRGP. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02951 415 FunFam Kinase suppressor of Ras 1 78 172 - -
Seca3g02951 415 CDD STKc_MAP3K-like 95 386 - -
Seca3g02951 415 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
Seca3g02951 415 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Seca3g02951 415 PRINTS Tyrosine kinase catalytic domain signature 186 199 IPR001245 GO:0004672|GO:0006468
Seca3g02951 415 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 62 389 - -
Seca3g02951 415 SMART serkin_6 89 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02951 415 Gene3D Transferase(Phosphotransferase) domain 1 190 404 - -
Seca3g02951 415 ProSiteProfiles Protein kinase domain profile. 89 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02951 415 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Seca3g02951 415 Pfam Protein tyrosine and serine/threonine kinase 91 386 IPR001245 GO:0004672|GO:0006468
Seca3g02951 415 SUPERFAMILY Protein kinase-like (PK-like) 65 386 IPR011009 -
Seca3g02951 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02951 Seca-Chr3 52793973 52799408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02951 1 347 MAP Kinase Kinase Kinase AT5G50000 72.857 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca3g02951 PK_Tyr_Ser-Thr 7.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02951 - - gmx:100809898 698.738