Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02946 ATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCACAGGCCAAGATGCTGCTCCGCATCTTCCTGGAATTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCCAAGTTCAGTTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCTCATTTGCTTGGAAGAGTTCCATGTAGAGAACGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATAAGTGGCTTCGGCTGAATGTGAAATGTCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTCTTGCCAATATCCATTCTGAGTCTGAACAGTCTTCTGCTAGTATTGCAGCAACAACCAGATAG 405 0.4617 MIRVPDWAFEAAGQETRGTGQDAAPHLPGIYLTPAQREAVEALIQELPKFSLKAVPTDCSECLICLEEFHVENEVRGLPCAHNFHVECIDKWLRLNVKCPRCRCSVFPNLDLSALANIHSESEQSSASIAATTR. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02946 134 ProSiteProfiles Zinc finger RING-type profile. 62 103 IPR001841 -
Seca3g02946 134 SUPERFAMILY RING/U-box 43 111 - -
Seca3g02946 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 108 IPR013083 -
Seca3g02946 134 FunFam E3 ubiquitin-protein ligase SIS3 30 108 - -
Seca3g02946 134 SMART ring_2 62 102 IPR001841 -
Seca3g02946 134 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 133 IPR044793 GO:0004842|GO:0010182
Seca3g02946 134 Pfam Ring finger domain 61 103 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02946 Seca-Chr3 52640337 52641329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02946 1 133 C3H Transcription Factor Family AT3G47990 76.692 3.67e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02946 K16284 - gmx:100812016 242.662