Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02935 ATGGATAATACAGATGATCTTTCGGCTGTTAAGTTGGATGATGAGAATGACCCTAGTTATGATGTTGGTCATGATGATAGTATTAGTGCAGATCCGTCGGATATTAGAGAAGAGAGCCAGGCTGCAGATATGGATGTTGGAGATGGGCAGTATAAGAGGATAACAAATTTGACCAGTGATGATGTAATGGGTTTGGAGTTTGTAACTCAATATGCTGCTTTCAAATTTTATGAGGATTATGCTAAAGCCCATGGTTTTGTAGTAAGGAAGGATGATATAAGGAAGGATTTCAGGGGTAATACTGTGATGCGACAATTTGTAAGCAATAGACAAGGATTGAGAAATAAAAAGCACTTCATGAGGGTAGACAGGAAAAGGGAGCACAGAGCAATAACCCGAACAAATTGTGGAGCTAAGCTTCGTGTATGTTTCAATCGCAAGAAATCAAAATGGATAGTGGTGTCTTTTGAGGAGGCACATAATCACGAGCTAACCCCTTCAGTATATGTGCATTTATATCCTGCTTATCGTAAAATGAGTGATGCAGATAAAGCTCAAGTTGATAGTTTACGTGCCCATGGTGTTAGAACTTGTCACATTATTGGTTACATGTTGGCCCAAAAAGGCGGATATGGGGGTTTGGGTTTTTGTAAAACAGATGTATACAACTATATTGACAGCAAAAGTCGTGTGCAGGTAAAAGATGGTGATGCAATTGCTGCTTTAAGCTATTTAGCAGGTAAGGCACAACATGATCCAACATTATTTGCGCAGTTCCAAATCACCACAAAAGGTAAGTTAAGACATATATTTTGGGCAGATGGAACTAGCATATCTGATTATCAATGTTTTGGTGACGTGGTTGCTTTTGATAGCACATATAGGAGGAACAAGTACAATTTTCCGCTAGTCATTTTTTCTGGTTGTAATCACCACTCCCAAACAACTATTTTTGGGTGTGCTTTGGTTTCCGATGAAACAATAGAGACATATAGATGGGTTTTGGAAGGTTTTGTAAAAGCAATGGGCAATAAACACCCAAAGGCGATTGTGACAGATGGTGATGGTGCCATGAGAGAGGCTATTAAACAATTTCCAACCTATCCCCCCAAACACAAAACTAGGATCCGAAGTGCTGATTTCTTCCAAATGGGGCTATGGAGATAG 1167 0.395 MDNTDDLSAVKLDDENDPSYDVGHDDSISADPSDIREESQAADMDVGDGQYKRITNLTSDDVMGLEFVTQYAAFKFYEDYAKAHGFVVRKDDIRKDFRGNTVMRQFVSNRQGLRNKKHFMRVDRKREHRAITRTNCGAKLRVCFNRKKSKWIVVSFEEAHNHELTPSVYVHLYPAYRKMSDADKAQVDSLRAHGVRTCHIIGYMLAQKGGYGGLGFCKTDVYNYIDSKSRVQVKDGDAIAALSYLAGKAQHDPTLFAQFQITTKGKLRHIFWADGTSISDYQCFGDVVAFDSTYRRNKYNFPLVIFSGCNHHSQTTIFGCALVSDETIETYRWVLEGFVKAMGNKHPKAIVTDGDGAMREAIKQFPTYPPKHKTRIRSADFFQMGLWR. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02935 388 Pfam MULE transposase domain 287 368 IPR018289 -
Seca3g02935 388 PANTHER OS01G0519700 PROTEIN 62 363 - -
Seca3g02935 388 MobiDBLite consensus disorder prediction 1 44 - -
Seca3g02935 388 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Seca3g02935 388 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02935 Seca-Chr3 52459843 52466832 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02935 FAR1 2.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02935 - - ccaj:109792835 494.967