Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02917 ATGGATCTTGAGACAAAGCTTAGAGAAACCTATGCTTCATATCCAATGCATTTACAAGAAAGCTACTTGAAACCCAGCATCAAAGATGAGATTCCTTTTGGGGTTCCTTCATCTCAGGGATTCATGCAAGATTTTCACCATATTGATCAGTTTCATGTGAATGGTTCCTCATCCAATCCCGTTACTGGGGTTCAAACTCCAAATGCTGATCCTAGTGATAATTTAACCTTTGTGTGTTCATCAACAGGTTTTGATGCTTATGAGTTTAAGCCTTTTGTGGAGAATAGTGGTACTCATGTTATGGACAATTTCCTTTATGGAGGTTATAGCAACCTCCCTCAGAGGAATCAAATGGATATGATGGTTACAAACCAAAGCTATTTTCCCTTTAATCCAAGAGAAACCAAGCCTATGAATTTTGTTGTACCAGATGAAGTCTCATGCATAGCACCAGTGAATCATTCCAAAAGAGTTGGCATGAACAAATACAATAGGACATATACAACCACTAGAAGGACACACAAAGTTCGTAAGAAGTCCAACATAGTCAAGGGACAATGGACAGTAGAAGAAGATGGGTTGCTGATTCAACTGGTAGAACAATATGGATTGAGGAAATGGTCTCATATTGCTCAGATATTGCCAGGAAGAATAGGAAAACAATGCAGAGAGCGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACATATGGACTGATGAAGAGGATAAGATACTGATTGAAGCTCATGCAGAGATAGGAAACAAATGGGCAGAGATTGCTAAAAGATTGCCAGGAAGAACTGAGAACTCAATCAAAAATCATTGGAATGCAACTAAGAGAAGGCAATACTCCAAAAGAAAGTGTCGCTCCAAGTACCCAAGAGGCACTCTTCTACAGGAATATATCAAGAGCTTGAACTTAGACAAAAACCCTCCAATAGACTATAGGAGAAAATCTTCTGCTAATGCTAACAATGCCATGAAAAACAAAGCTACCACAAGCAAATTAGCAGTACCAATAGCTCAGCCCCAGATTGGTGATGAATTTTGTCCCAGTGATTGCTTTGTGCCAAATTGTGATTTTAATGGGGTCTCTGACTTTTGCTTTGGTGAGAATTTGTTTGAAGAAGGATGTAGTATTGATTCTTTGCTAGATGATATGCCTTGTGGTCCTATTACTATGAATGAGAAAGGTTTTGAAGGAAAAATGCAATGTGCTCCTGTTGTTAATCTTGATGACAATCATGTTGAGACAGAGATGCCACTTGGGATTATGGCATCCATGCTGGGGGTTGAAGTTAAGAAGGAGCTGGATTTGGTGGAGATGGTCAATGGAATTGTTAAATAA 1353 0.3917 MDLETKLRETYASYPMHLQESYLKPSIKDEIPFGVPSSQGFMQDFHHIDQFHVNGSSSNPVTGVQTPNADPSDNLTFVCSSTGFDAYEFKPFVENSGTHVMDNFLYGGYSNLPQRNQMDMMVTNQSYFPFNPRETKPMNFVVPDEVSCIAPVNHSKRVGMNKYNRTYTTTRRTHKVRKKSNIVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQILPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPIDYRRKSSANANNAMKNKATTSKLAVPIAQPQIGDEFCPSDCFVPNCDFNGVSDFCFGENLFEEGCSIDSLLDDMPCGPITMNEKGFEGKMQCAPVVNLDDNHVETEMPLGIMASMLGVEVKKELDLVEMVNGIVK. 451
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02917 450 ProSiteProfiles Myb-like domain profile. 231 281 IPR001005 -
Seca3g02917 450 CDD SANT 187 230 IPR001005 -
Seca3g02917 450 FunFam Transcription factor MYB119 237 301 - -
Seca3g02917 450 ProSiteProfiles Myb-like domain profile. 179 230 IPR001005 -
Seca3g02917 450 SMART sant 235 283 IPR001005 -
Seca3g02917 450 SMART sant 183 232 IPR001005 -
Seca3g02917 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 234 IPR017930 -
Seca3g02917 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 285 IPR017930 -
Seca3g02917 450 Pfam Myb-like DNA-binding domain 184 230 IPR001005 -
Seca3g02917 450 Pfam Myb-like DNA-binding domain 239 278 IPR001005 -
Seca3g02917 450 Gene3D - 183 236 - -
Seca3g02917 450 FunFam Transcriptional activator Myb isoform A 183 236 - -
Seca3g02917 450 SUPERFAMILY Homeodomain-like 181 277 IPR009057 -
Seca3g02917 450 CDD SANT 239 281 IPR001005 -
Seca3g02917 450 PANTHER MYB PROTEIN-RELATED 160 324 - -
Seca3g02917 450 Gene3D - 238 298 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g02917 Seca-Chr3 52049387 52051348 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02917 84 390 MYB Transcription Factor Family AT4G18770 53.438 6.37e-102 309
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g02917 Myb_DNA-binding 2.6e-16 CL0123