Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02902 ATGGATGAGGAGCTGTATGGCGCCTTCCACTATTACTCAGAACAGTCATCAATGGCTCCGCCACCGCCGCCACCAGCACCGATCACTCACAACGTGACTTCATCGATTAGGACACTAGTCCGGTACGGACCGGAACAGTTCATCCGGTCCGGTTCTTCTTCTGCATCTGATGCAGTGTCCTCTAATTATAAGGCTGTTTTGCAGCAACAGGAGGAGGAGGAGGAGGATTCTCAATCTCAAGTACTTCGCGCTAAAGTAGCTTCTCATCCTCTTTTCCCTCACCTTCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCGCCGCCAGAGATGGCGCAAGTATTAGAAGGAATCAGATCGAGGGGAGAGGGAGAGCAGAATAGTGGTGCGTGTCAGTTATCTTCCTTGTTCGGTGCAGATCCCGAGCTCGACGATTTCATGGAAATGTATTGCAATTTATTGGTGAAGTACAAATCGGATATTTCAAGGCCTTTTGACGAGGCAATCGCTTTCATCAACGACATGGAAACGCAGCTCAACTCCATCTGTAACGGCCCTGCTGCAGTCAGAAGCAACGCTCCTCAAACTGGTCTCGCTCTCTCTTTCTCTCTCTTGGAAATAACCGGATCATCTGAAAAGGATTTTATGAGGGAGGAGAAAGAGTGCAAGAGGATAACTGAAGTTCAAGAGCTGAAGGACAATCTTCAACGTAGATATAGTGGCTACATTAGTAATCTGAAGCATGAATTTTCCAAAAATAAAAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAAATCTTACTTACATGGTGGAATATTCACCTTAAATGGCCATACCCAACGGATGCGGATAAGGTTGCCCTAGCTGAATGGACTGGTCTGGACCAGAAGCAGGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACGAACGAAATGCAAGCTGCAGTTTTGGATGGTCTCTATGGACCTCTGTACGAATGA 996 0.4639 MDEELYGAFHYYSEQSSMAPPPPPPAPITHNVTSSIRTLVRYGPEQFIRSGSSSASDAVSSNYKAVLQQQEEEEEDSQSQVLRAKVASHPLFPHLLHAYIDCHKVGAPPEMAQVLEGIRSRGEGEQNSGACQLSSLFGADPELDDFMEMYCNLLVKYKSDISRPFDEAIAFINDMETQLNSICNGPAAVRSNAPQTGLALSFSLLEITGSSEKDFMREEKECKRITEVQELKDNLQRRYSGYISNLKHEFSKNKKKEKLPKEAKQILLTWWNIHLKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTNEMQAAVLDGLYGPLYE. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02902 331 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Seca3g02902 331 Pfam KNOX2 domain 138 183 IPR005541 GO:0003677|GO:0005634
Seca3g02902 331 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Seca3g02902 331 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Seca3g02902 331 CDD homeodomain 265 313 IPR001356 GO:0003677
Seca3g02902 331 Pfam KNOX1 domain 82 120 IPR005540 GO:0003677|GO:0005634
Seca3g02902 331 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Seca3g02902 331 SMART HOX_1 252 317 IPR001356 GO:0003677
Seca3g02902 331 SUPERFAMILY Homeodomain-like 252 323 IPR009057 -
Seca3g02902 331 MobiDBLite consensus disorder prediction 62 81 - -
Seca3g02902 331 SMART ELK_2 230 251 IPR005539 GO:0003677
Seca3g02902 331 Gene3D - 247 321 - -
Seca3g02902 331 Pfam ELK domain 230 251 IPR005539 GO:0003677
Seca3g02902 331 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Seca3g02902 331 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 318 - -
Seca3g02902 331 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02902 Seca-Chr3 51867118 51873552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02902 42 330 Homeobox Transcription Factor Family AT1G23380 47.423 2.39e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca3g02902 KNOX2 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02902 - - gmx:102662019 329.331