Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02888 ATGCAGGCTATCTGGTTAGAATGCACACAAGAAGCGGGTGAAATCATATTTGTTCCTAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAAGGACTACAATGAAGCCAAGGAATACATAGAAGATATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTTGCTATATAAATGGACGAGATGGAAACAAAATTGGAAGTTCATCAACAGTAGCTCAGCATTTATCTATGAATCTTGGGTCTATAAGGAAGATTGCATCAGATATGAAACACATGCATGCTCTGGAAGGAAATCAAGATTGCACTGTGGATATAATCAAAGCATTTAAAGATCCAAGGTTTTCCCAATTGTGCATGCATATGGGAAGAACATATTTAACAATACATGAGCAATCTAATTTGTCCTCTGACTTTGAGAGCTCTTCAATGGTTAATTTGTTGGACCTCAATGTTTTGAAAGCATACACTTCTTCTCAGGTCTACACACCTGAAGATCTCATTAGTTTCATAGACAATGCTGTTACAGAACTAGGTGACTGTTACATTGAGTCATCTGTACTACATGTTGCTTGA 732 0.3716 MQAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLKDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLCYINGRDGNKIGSSSTVAQHLSMNLGSIRKIASDMKHMHALEGNQDCTVDIIKAFKDPRFSQLCMHMGRTYLTIHEQSNLSSDFESSSMVNLLDLNVLKAYTSSQVYTPEDLISFIDNAVTELGDCYIESSVLHVA. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02888 243 ProSiteProfiles JmjC domain profile. 1 56 IPR003347 -
Seca3g02888 243 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 5 104 - -
Seca3g02888 243 Pfam JmjC domain, hydroxylase 7 39 IPR003347 -
Seca3g02888 243 Gene3D Cupin 1 41 - -
Seca3g02888 243 SUPERFAMILY Clavaminate synthase-like 4 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02888 Seca-Chr3 51714836 51717649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02888 6 48 Glycosyltransferase AT1G78280 46.512 2.67e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca3g02888 JmjC 8.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02888 - - gsj:114409851 406.757