Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02887 ATGGGTATCAACATAAAGGGACAAATAGAGAAGGTGAATGGGAAGGAACTGAGTTACAGTGAATTTGTGGAGAGATATATGGAAAAGAACCAGCCGGTTGTGCTCACTGGACTCATGGACCATCATTGGAGGGCTTGCAATGACTGGGTCACCCCTCATGGACAACCCAATCTTCAATTTTTCTCAACTCATTTTGGGGCCTCTAAAGTTCAGGTTGCAGATTGTGATACCAGAGATTTCACTGATCAAAAAAGAGAGGATATGATGGTCTCAGATTTCATAGGATGTTGCCTTCAAGTTGAGGGTTCTGCAGTTCAGTGTAATAATGAAAATCGTACAAGTAATGGTCACTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCAGAATATGTAGCATACACCACTCCAATGTTCTTCTGTGATGATTGGCTCAACTTTTATCTTGACAACTTCAGAATGCATACAGATTCTGACACTTACAAGCAAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGAGTAAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGCGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGCATGAATGCATTTGCCAAATAGAAATTCATGATATTTTTTAA 717 0.4003 MGINIKGQIEKVNGKELSYSEFVERYMEKNQPVVLTGLMDHHWRACNDWVTPHGQPNLQFFSTHFGASKVQVADCDTRDFTDQKREDMMVSDFIGCCLQVEGSAVQCNNENRTSNGHSVSVPYLKDWHFVKEYPEYVAYTTPMFFCDDWLNFYLDNFRMHTDSDTYKQNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRHECICQIEIHDIF. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02887 238 Pfam Cupin-like domain 21 222 IPR041667 -
Seca3g02887 238 Gene3D Cupin 2 235 - -
Seca3g02887 238 SUPERFAMILY Clavaminate synthase-like 7 225 - -
Seca3g02887 238 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 224 - -
Seca3g02887 238 ProSiteProfiles JmjC domain profile. 130 238 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02887 Seca-Chr3 51712508 51714376 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca3g02887 Cupin_8 2.6e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02887 - - lja:Lj1g3v0342020.1 441.039