Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02886 ATGTCCCATTCCCACAAAGCTAAGCTACGTCCACCTACCTATTTCTCAAGTTTGGACCACACTACACCATTACAAACCCCGCTACAGAAAGAACCATCATCAAGCAAAAGCTCTCACAAACCCATGGCGGATCCAACCTCCTCCAACCCTGATAAGGATCAATCCTCTTCCGACCCGAAAAATAATAAGAAGGACTATTCCACAGCAATATTAGAACGCAAGAAGTCTCCTAACCGACTTATTGTTGATGAAGCAATTAATGATGATAATTCTGTGGTTACTTTGCACCCTGCTACAATGGAAACACTTCAACTTTTCCGGGGTGACACGGTTCTGATAAAGGGAAAGAAACGAAGGGACACAATTTGCATTGTTCTTGCTGATGAACAGTGTGATGAACCAAAAATAAGGATGAATAAAGTTGTTCGAGCTAATCTTAGAGTTCGACTTGCAGATGTTGTCTCTGTCCATCAATGTCCTGATGTGAAGTATGGGAGGCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTAACTGGCAACTTGTTCGATGCATATCTGAAGCCATACTTTCTGGAGTCTTACCGGCCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGGGGTGGGATGCGAAGTGTTGAATTCAAGGTAATAGAGACTGATCCTGGTGAGTACTGTGTTGTTGCACCTGACACTGAAATTTTCTGTGAGGGAGAACCAATCAAAAGGGAAGATGAGGAGAGATTAAATGAAGTTGGTTATGATGATGTTGGTGGTGTTAGGAAACAAATGGCTCAAATTCGTGAGCTAGTAGAGCTTCCACTTAGACACCCACAACTCTTCAAATCAATTGGTGTTAAGCCCCCAAAAGGAATATTGCTTTATGGACCACCTGGTTCTGGAAAGACTCTGATTGCAAGAGCAGTAGCTAATGAGACAGGTGCATTCTTTTTTCTGATTAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGTAATCTCAGGAAAGCTTTTGAAGAAGCTGAAAAGAATTCTCCTTCTATCATTTTTATTGATGAATTAGACTCAATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATTGTTTCACAGCTTTTGACTCTAATGGATGGCCTCAAGTCTCGATCACATGTTATTGTTATTGGAGCGACAAATAGGCCTAATAGTATTGATCCTGCTTTGAGAAGGTTTGGAAGGTTTGATCGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTCTCAGACAATGTTGATCTTGAAAGAGTTGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATCCGGGAGAAAATGGATGTCATTGACTTAGAGGATGAAACAATAGATGCTGAGGTGTTGAATTCCATGGCTGTGACTAATGAACACTTCCAAACAGCTTTAAGTTCTTCAAACCCATCTGCCCTGCGTGAAACAGTGAGTTTGGCTTCTGTTGTGGAGGTTCCAAATGTTTCCTGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACACCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCCAAAGGTGTTCTCTTTTACGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCAATTGCTAATGAATGCCAGGCTAACTTCATAAGTGTTAAGGGACCTGAGTTGCTGACAATGTGGTTTGGTGAGAGTGAAGCAAACGTTCGCGAGATATTTGATAAGGCCCGGCAATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGCGAGGCAGTTCTGTAGGTGATGCTGGTGGTGCTGCAGATAGAGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACAGCTAAGAAAACAGTTTTCATCATTGGGGCAACAAACAGACCAGACATTATAGACCCTGCATTGCTCAGGCCTGGACGTTTGGACCAACTGATTTACATCCCTTTACCAGATGAAACTTCACGTCTTCAAATCTTCAAGGCATGCTTGAGGAAGTCACCAATCTCCAAGGATGTTGACCTGGCAGCTCTTGCCCGTTTTACTCATGGATTTAGTGGTGCAGACATCACAGAAATTTGCCAACGTGCTTGCAAATATGCCATTAGAGAAGACATTGAGAAGGGTATTGAGAAGGAGAGAAGAAAAAGAGAGAACCCTGAAGCCATGGAAGAAGATGAGATTGGAGATGTGGCTGAGATAAAACCAGCCCACTTTGAGGAGTCTATGAAGTTTGCTCGGCGGAGTGTGAGTGATGCTGACATCAGGAAATACCAACTCTTTGCTCAGACCTTGCAACAGTCTCGTGGTATTGGATCGGAGTTTCGGTTTCCAGATCGAACTGAGAACACTCCAACAGGAGCCGCTTCAGACCCCTTCTCATCTGTTACAGCTGAGGGAGATGATGATCTGTACAGTTAA 2586 0.4331 MSHSHKAKLRPPTYFSSLDHTTPLQTPLQKEPSSSKSSHKPMADPTSSNPDKDQSSSDPKNNKKDYSTAILERKKSPNRLIVDEAINDDNSVVTLHPATMETLQLFRGDTVLIKGKKRRDTICIVLADEQCDEPKIRMNKVVRANLRVRLADVVSVHQCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALSSSNPSALRETVSLASVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDETSRLQIFKACLRKSPISKDVDLAALARFTHGFSGADITEICQRACKYAIREDIEKGIEKERRKRENPEAMEEDEIGDVAEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTENTPTGAASDPFSSVTAEGDDDLYS. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02886 861 NCBIfam CDC48 family AAA ATPase 80 821 IPR005938 GO:0016787
Seca3g02886 861 FunFam Transitional endoplasmic reticulum ATPase 517 705 - -
Seca3g02886 861 CDD RecA-like_CDC48_r1-like 258 423 - -
Seca3g02886 861 Gene3D - 521 705 IPR027417 -
Seca3g02886 861 MobiDBLite consensus disorder prediction 834 848 - -
Seca3g02886 861 Gene3D - 425 520 - -
Seca3g02886 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 818 IPR027417 -
Seca3g02886 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 517 IPR027417 -
Seca3g02886 861 Gene3D - 709 817 - -
Seca3g02886 861 Gene3D - 259 423 IPR027417 -
Seca3g02886 861 MobiDBLite consensus disorder prediction 15 55 - -
Seca3g02886 861 SUPERFAMILY Cdc48 domain 2-like 161 253 IPR029067 -
Seca3g02886 861 PANTHER AAA-FAMILY ATPASE 453 823 - -
Seca3g02886 861 MobiDBLite consensus disorder prediction 1 72 - -
Seca3g02886 861 ProSitePatterns AAA-protein family signature. 394 412 IPR003960 GO:0005524|GO:0016887
Seca3g02886 861 SMART CDC48_2_2 179 245 IPR004201 -
Seca3g02886 861 Gene3D - 56 161 - -
Seca3g02886 861 FunFam Transitional endoplasmic reticulum ATPase 56 161 - -
Seca3g02886 861 Pfam Cell division protein 48 (CDC48), N-terminal domain 79 160 IPR003338 -
Seca3g02886 861 SUPERFAMILY ADC-like 75 159 IPR009010 -
Seca3g02886 861 Pfam ATPase family associated with various cellular activities (AAA) 572 705 IPR003959 GO:0005524|GO:0016887
Seca3g02886 861 Pfam ATPase family associated with various cellular activities (AAA) 294 423 IPR003959 GO:0005524|GO:0016887
Seca3g02886 861 ProSitePatterns AAA-protein family signature. 675 693 IPR003960 GO:0005524|GO:0016887
Seca3g02886 861 SMART AAA_5 568 707 IPR003593 GO:0016887
Seca3g02886 861 SMART AAA_5 290 426 IPR003593 GO:0016887
Seca3g02886 861 SMART CDC48_N_2 79 162 IPR003338 -
Seca3g02886 861 FunFam Cell division control 48 162 258 - -
Seca3g02886 861 Pfam AAA+ lid domain 727 767 IPR041569 -
Seca3g02886 861 Pfam AAA+ lid domain 446 488 IPR041569 -
Seca3g02886 861 Gene3D - 162 258 - -
Seca3g02886 861 FunFam Cell division control 48 425 516 - -
Seca3g02886 861 CDD RecA-like_CDC48_r2-like 543 703 - -
Seca3g02886 861 MobiDBLite consensus disorder prediction 56 72 - -
Seca3g02886 861 Pfam Cell division protein 48 (CDC48), domain 2 181 244 IPR004201 -
Seca3g02886 861 FunFam Transitional endoplasmic reticulum ATPase 255 423 - -
Seca3g02886 861 MobiDBLite consensus disorder prediction 826 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02886 Seca-Chr3 51705691 51710680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02886 564 763 Calmodulin-binding Proteins AT3G56690 42.365 1.03e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02886 K13525 - gmx:100798680 1541.94