Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02883 ATGGTTAACATAGGTGAGGAGCCATGTATTAATTTAGATGATGACAGAGATGATAATGATAGTTATGGTGTTAGCATTGATGAAAGTGTTCATGGAGAGGACAGTGGTGTAGGGGGTCAAAATGAGCAGGGAGAACTGGTTTCACCAGATGAAAAAGTTAGACAGCTATTAGACCTTACAGGTGATGATATACGAATGCTTGAATTTGGTAGTGAACATGAGGCATGTATATTTTATGAGACATATGCTAAGTCTATTGGGTTTTCTGTGAGGAAAGATGGTGTAACTAGAGATTCTAAAGGTCAGGTGGTAATGCGACAAATCGTATGCAACAGAGAGGGTTTGAGGAATAAAAAGCACTTCAGGAGGGTTGACAGAAAAAGACCCCATAAACCAATAACTCGCACAAAGTGTCCAGCTAAGTTGAGGGTGCATTATGATTTCAAGAATTCAAAATGGAAAGTGGTTTCTTTTGTGGAGACCCATAATCACGATCTAACCCCAGCAATGTATAGGCACCTAATGCCTACATACCGTGTTATTTCTGATGCGGACAAAGCTCAGGTGGATAGCTTGCACTCAAGTGGGGTTAAGACATGTCATATAATGGGATATATGCTGTCACAAAAAGGGGGATATGGTAAACTTGGTTTTTGTAAGAAGGATTTGTATAATTATATAGATCGCATAAAGTGCCTTAAGATTAAGAGTGGAGATGCACGGGCTGCATTGAGCTATCTACAAGGCAAGGCAGATAATGACCCAGTGCTATATTCGAGTTTTGAAACTACTGATGATGGTAAATTAAAGCACCTATTTTGGGCAGATGGATGCAGCATAGCTGATTATATGTGCTTTGGTGATGTTGTTGCATTTGACGCCACCTACAAGAAGAACAAGTACAACAAACCCCTAGTTATATTCTCTGGTTGTAATCACCATTCCCAAACAGTTATATTTGGGTGTGCTTTGGTGTCTGATGAGACAACTGAGACATATAAATGGGTCTTAGGAGCTTTTCTGGATGCAATGCAAAATAGACCACCTAAAGCAGTGGTAACAGATGGAGATGCTGCTATGAGAGAGGCTATAAAGACTGTGTTTCCGGGCGCTTCACATCGCCTTTGTGCATGGCATTTGCACAAGAATGCATGTGAGAATGTGAAGAATTCTCCTTTTCTAGAAGATTTCAAGAAAGCAATGTACTCTAACTTTACCCCAGATGAGTTTGAAGAATTTTGGCACAAAATGGTGGTGAAACATGGTCTTCAGGGGAATAAATGGGTTTCCAAATCTTACCAAAATAAGGCATTGTGGGCCACTGCGTACTTGCGTGATAAATTTTTTGGTCGTATAAGGACCACTTCTCAATGTGAAGCAATTAACTCATTGATCAAGTCTTATGTTGAGAAGAAAAATAGCATTCTTGAATTCTTGCACAATTTTGAGAAAGTTTTGAAGGAATATAGGAACAATGAGCTAATGGCAGATTTCAAGTCTCTTTTTACTGAACCTGTTTTGACCACATATCTGAACAAGATTGAGCGTCAAGCTGCACAAATTTTCACTCAAGAAATTTTTAAAGAGGTTAAGAATGAGATTGAAGGATCTGGTGCATTTAATGTTGTTGAGCGAGTTGAAAATACATCCCAAGTGACATATAAGCTTAATAAATATTGTAAGCCAGACCGTAAAATTTGTGTTGCTTATGATATTTTGAAGTCAGAATTTCTCTGTGATTGTAAACTGTTTCAGTCTCGTGGCATTCCATGTTGTCATGTTATTTGTGCTATGAAACATGAGCACATGGACCACTTTCCAAACAGTTTGATTTGTAAAAGGTGGACTAAGACAGCTAAAAGTGAGTACATTTCAGCAGCAAATTCAGAGGAATTGGAATCCGATACAATGATTGTTGCTCGTTTTGCATCTCTAGTTGCTTCTTGCAATAGACTTTGTGAGATTGCCTCAAAAAGTAGTGAAACATTCAAGTGGGTAAGAGATGAGATGTTCAAGCTTATTAATAAGATAGAGAAAAAGGGTAAAACAAAGACCAAAGATAGCTCTTCTTTTGAAGATGTCCATGATCCGGATGTGGTCAAAACCAAGGGTGCTCCAACAAAGAAAAATCATGGGAGGAAGAGGAAACGATGCTCTAACTGTAACAGAACTGGACATATTAAAAAAAGATGTCCAAGGCTTATTGCTGAAGTCAATCGAACTGTAAAAAATGATGATGTAAGATCTGTTGATATTTTTTAA 2262 0.382 MVNIGEEPCINLDDDRDDNDSYGVSIDESVHGEDSGVGGQNEQGELVSPDEKVRQLLDLTGDDIRMLEFGSEHEACIFYETYAKSIGFSVRKDGVTRDSKGQVVMRQIVCNREGLRNKKHFRRVDRKRPHKPITRTKCPAKLRVHYDFKNSKWKVVSFVETHNHDLTPAMYRHLMPTYRVISDADKAQVDSLHSSGVKTCHIMGYMLSQKGGYGKLGFCKKDLYNYIDRIKCLKIKSGDARAALSYLQGKADNDPVLYSSFETTDDGKLKHLFWADGCSIADYMCFGDVVAFDATYKKNKYNKPLVIFSGCNHHSQTVIFGCALVSDETTETYKWVLGAFLDAMQNRPPKAVVTDGDAAMREAIKTVFPGASHRLCAWHLHKNACENVKNSPFLEDFKKAMYSNFTPDEFEEFWHKMVVKHGLQGNKWVSKSYQNKALWATAYLRDKFFGRIRTTSQCEAINSLIKSYVEKKNSILEFLHNFEKVLKEYRNNELMADFKSLFTEPVLTTYLNKIERQAAQIFTQEIFKEVKNEIEGSGAFNVVERVENTSQVTYKLNKYCKPDRKICVAYDILKSEFLCDCKLFQSRGIPCCHVICAMKHEHMDHFPNSLICKRWTKTAKSEYISAANSEELESDTMIVARFASLVASCNRLCEIASKSSETFKWVRDEMFKLINKIEKKGKTKTKDSSSFEDVHDPDVVKTKGAPTKKNHGRKRKRCSNCNRTGHIKKRCPRLIAEVNRTVKNDDVRSVDIF. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02883 753 ProSiteProfiles Zinc finger SWIM-type profile. 570 602 IPR007527 GO:0008270
Seca3g02883 753 PANTHER OS01G0519700 PROTEIN 67 729 - -
Seca3g02883 753 Pfam MULE transposase domain 289 383 IPR018289 -
Seca3g02883 753 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g02883 753 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Seca3g02883 753 SUPERFAMILY Retrovirus zinc finger-like domains 704 736 IPR036875 GO:0003676|GO:0008270
Seca3g02883 753 MobiDBLite consensus disorder prediction 684 719 - -
Seca3g02883 753 ProSiteProfiles Zinc finger CCHC-type profile. 717 733 IPR001878 GO:0003676|GO:0008270
Seca3g02883 753 SMART 26again6 577 604 IPR006564 GO:0008270
Seca3g02883 753 MobiDBLite consensus disorder prediction 684 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02883 Seca-Chr3 51671222 51673483 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02883 MULE 1.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02883 - - ccaj:109792835 876.7