Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02878 ATGGCATCATCCAGTTCTTACAATTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAATGCTTGCCAGGTTGCATCTTTGCACCTTACTTCCCACCTGAAGAGCCTCAAAAATTCGCCAACGTCCACAAGATCTTCGGTGCCAGTAATGTGACAAAGCTTCTGAATGAACTCCTCCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCAGAGGCTCGTGTGAGAGACCCCGTTTATGGCTGTGTAGGTGCCATCTCTTTCCTCCAGAGACAAGTTCAGAGGCTCCAAAAGGAACTTGATTCTGCTAATGCTGATCTCCTTCGCTATGCCTACAATGATATCTCTCCATCATCTCTGCCACCAGGAATCACCACTTCAACAATTCAACCTCATACTCAGAGGCAGTTTAGTGCAAGAATTGGTAATGAAGCAAGTGGCTTTTATCGCCAATCTCCAACTACTTTCTCTTTTCCTTATTCTCTTCCATGGACTGATACCTCTTCAGAGGATATCAATGAAGTAGGAGGAGGAGGAGGTAATTTGTGA 558 0.4552 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDISPSSLPPGITTSTIQPHTQRQFSARIGNEASGFYRQSPTTFSFPYSLPWTDTSSEDINEVGGGGGNL. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02878 185 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Seca3g02878 185 Coils Coil 89 116 - -
Seca3g02878 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
Seca3g02878 185 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02878 Seca-Chr3 51533767 51536097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02878 1 134 AS2 family AT5G63090 81.481 2.11e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g02878 LOB 5e-42 No_clan