Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02872 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAACTCTTCAATTACATAACCAGGTTTGGTGTTGGATGCTGGAGTTCAGTTCCCAAACAAGCTGGGCTCCAAAGATGTGGAAAAAGCTGCAGATTGAGATGGATAAATTATTTAAGGCCTGATTTGAAGAGAGGGATGTTCTCACAACAAGAGGAGGATCTTATAATGAGTCTTCATGAAGTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAGTTGCCAGGGAGAACAGATAATGAGATAAAGAACTTCTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCAACTACACACAAGCCTCTCCTCAATAGTGAAACTCATGTAAAGGAAGAGAAGAAGGAAATAATAAGCACAGAGACAGAGACACCTTCCATGCTAATACCAATTTCTGAAGCAGGGGTTTTAGCTACATCCACAACAGGGTCAGCATTTTTAATGAGTGACTCAAATTACTATGATAATGGGGTAACTACTACTATAACAGAAGCTTCAAGAGAAGTTTTTAACCCCTTGTCCTACTTTGAATTCCAAATGGGTGTTCCTCAAATAGGTTATAATTATAATTCAAGCCTTATTAGACAATTTGATCAGAATCAGTTCAGTGGATTCAGTTCAATGCCATGTTCTGATAATGGGAACGTGTCGGTGGCAGAGTTTTCAGATAACAAAATCAGTTGTAATTTGTTGGTGAAAAAAAGTTGTAGCAATATGAGTGTTTATCCAGCAGGGATGGAAAATGCAGTGTTCTCATGGGGTGAAGAGAACAAGATGGATCCTTTGTTAGAGTTTGAAATCAATGGTGCAAAATCTCAAGAGTTGAAGGCAAGTTCATGGCAAGAAGGGCATTTGCTGACACAAAATTCAATGGATTTCAGTAGCTATCCTTTAACGTCACTATCAGAAGATCTAACTGGAGCAAATTTTGATGTATTCCAGCAGATATGA 1029 0.3868 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIMSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLLNSETHVKEEKKEIISTETETPSMLIPISEAGVLATSTTGSAFLMSDSNYYDNGVTTTITEASREVFNPLSYFEFQMGVPQIGYNYNSSLIRQFDQNQFSGFSSMPCSDNGNVSVAEFSDNKISCNLLVKKSCSNMSVYPAGMENAVFSWGEENKMDPLLEFEINGAKSQELKASSWQEGHLLTQNSMDFSSYPLTSLSEDLTGANFDVFQQI. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02872 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca3g02872 342 SMART sant 66 114 IPR001005 -
Seca3g02872 342 SMART sant 13 63 IPR001005 -
Seca3g02872 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g02872 342 FunFam Myb transcription factor 11 67 - -
Seca3g02872 342 CDD SANT 70 109 IPR001005 -
Seca3g02872 342 PANTHER MYB DOMAIN PROTEIN 55 1 246 - -
Seca3g02872 342 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca3g02872 342 CDD SANT 17 61 IPR001005 -
Seca3g02872 342 Gene3D - 69 145 - -
Seca3g02872 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca3g02872 342 FunFam Transcription factor MYB86 69 139 - -
Seca3g02872 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g02872 342 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca3g02872 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca3g02872 342 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02872 Seca-Chr3 51430783 51432463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02872 1 143 MYB Transcription Factor Family AT4G01680 79.021 2.94e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g02872 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02872 K09422 - gmx:100799243 454.136