Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02870 ATGCTGGAGAAAATGCAAATGAAATTAAAAGAGCAAGTGGAAGCCATGAAAACAGAACTTTTAGGCAGTTTCAAAATTGTTTTGACTCAGTTGCAAAAATGCTTTCCAGGAAAAACAATTTCAGATTTGTGCAACATTGAAAGTATGAATGAAGAGGAAGTTGTTAATGCACATTCTTCTGTCACTACTCATGCTTATGTTGAGCTTATTTTCTTTTCTCCATTTTTGCCTGTTTCAGAAATTCAAATTGTGGAAAATCTTGATGAAGTTAAGAAGCCCGAAAAAAGCAAATCAAAAGAACATAAGGCCAAAGGGGTCGCAGTTGAGAAGGATCCTAATGTGCTCGAGTGTCCACCCACTGCCTTTCGACTCTTCTTGGAGACATTTAGAAAAGATTATAATGAAGCAAATCTTGATTCAGAGAATATTCAAAGGATTAATAAAGTGGTTGTTAAAACGTGGAAGTCCATGACTGATGAAGATAAGAAGTCTTACTTGGATAAAGCAGCTAAACTCAAGGAAAAATATGAGAAACTAAAGTTTACGGGATTAAATGAGAGGTTTTCTCACTCTAATAGGCCAGAAAGCTCATCTGGTAAGTGCACTTCACCAAGATCAAATAAAGCAATTGATGGTTTTCAAGAGAGGCGAATAGGGAAAAGGGAACTAAATTTGCTGAAGGTGGTGATGGGCATGAAATGGCTACAAATGTTAGCGAATTACAGATCTAGGATAATAGATTTGTTATGA 750 0.36 MLEKMQMKLKEQVEAMKTELLGSFKIVLTQLQKCFPGKTISDLCNIESMNEEEVVNAHSSVTTHAYVELIFFSPFLPVSEIQIVENLDEVKKPEKSKSKEHKAKGVAVEKDPNVLECPPTAFRLFLETFRKDYNEANLDSENIQRINKVVVKTWKSMTDEDKKSYLDKAAKLKEKYEKLKFTGLNERFSHSNRPESSSGKCTSPRSNKAIDGFQERRIGKRELNLLKVVMGMKWLQMLANYRSRIIDLL. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02870 249 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 8 195 - -
Seca3g02870 249 Coils Coil 162 182 - -
Seca3g02870 249 Gene3D High mobility group box domain 97 180 IPR036910 -
Seca3g02870 249 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 115 178 IPR009071 -
Seca3g02870 249 MobiDBLite consensus disorder prediction 187 207 - -
Seca3g02870 249 Pfam HMG (high mobility group) box 118 178 IPR009071 -
Seca3g02870 249 SUPERFAMILY HMG-box 107 178 IPR036910 -
Seca3g02870 249 SMART hmgende2 114 185 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02870 Seca-Chr3 51354925 51358654 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca3g02870 HMG_box 1.3e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02870 K25507 - vun:114166702 89.7373