Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02855 ATGAGTGCTCCTATGGAGACGGAGGTCACCCAGCAGCAGCAAAATCCCGAAACCGATCAAAACGGCGTCGCTTCCCAGCACTCACCTACTTCTTCTACGCTTCCCGAAGACAAAGTTCTCGTCCCTGTTGAGGTGTGCTTAAAACCTTCCAGCACAGCTCCGATACACGATGTCCGTTCAGCCGTCGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATATTGATGGACCCATTCCCGTGCCCCTTGATGAACCATTTCTTGCAGATAACGTGCAAAGAATTTGCGTTTGTGAAACAGATGAAGGGATGCACAATGATAATGTACTTTTGTTCTGGCAAGTTAAGCCTGTTGTACACGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAGCGGTTGTTACGTTATGCAGCGAGTGCTTTGCTCTTTACCGAGAAAGGTGTTGATCCATTCCTTGTTTCATGGAACCGAATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGCAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCAAGATACCCACAGTGCCAACTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAGGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTAGTTAACGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATGATTCTAACCACATCCAACATAACTGCTGCTATCGATATTGCATTTGTTGATCGAGCTGATATCAAAGCATATGTCGGTCCACCAACTCTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAACTGATCCGTACAGGGATATTAACTAGTTTTCAGGATTGTAAGAATGCCATGCTTCCAAATTATGCTAGTGCAAAGCAGAGGTTGAACGTACCAGATTTTGTTGAGGCTGCTACATCCATGCAACTATGCAAGCAACTACTTGAAACTGCAGAGGCATGTGAGGTAGGGAAAAAATTACTGCTCATGGATCATGAACCTCAATCTTTTGCTTGA 1281 0.4294 MSAPMETEVTQQQQNPETDQNGVASQHSPTSSTLPEDKVLVPVEVCLKPSSTAPIHDVRSAVEGMLEKRSLSYIDGPIPVPLDEPFLADNVQRICVCETDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVMILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSFQDCKNAMLPNYASAKQRLNVPDFVEAATSMQLCKQLLETAEACEVGKKLLLMDHEPQSFA. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02855 426 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Seca3g02855 426 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Seca3g02855 426 CDD RecA-like_Pch2-like 140 338 - -
Seca3g02855 426 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Seca3g02855 426 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Seca3g02855 426 Gene3D - 133 357 IPR027417 -
Seca3g02855 426 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 18 410 IPR044539 -
Seca3g02855 426 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Seca3g02855 426 SMART AAA_5 190 342 IPR003593 GO:0016887
Seca3g02855 426 MobiDBLite consensus disorder prediction 1 35 - -
Seca3g02855 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02855 Seca-Chr3 51037919 51043667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02855 139 357 Calmodulin-binding Proteins AT3G56690 30.357 4.92e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02855 K22399 - gmx:100795009 712.99