Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g02850 | ATGCCGCCGGATTCACCCGAGCAAGACGATGATCCTGAAAACGAGTTCGCCGAAATTGATCCCACCGGTCGATATGGTCGGTACAAGGAAGTTTTAGGGAAGGGGGCTTTCAAGAAAGTATACCGAGCGTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAAGTTAAGGTGGCTGATCTAGTGCGTAACTCTGTGGATTTGGAGCGCCTTTATTCAGAAGTTCATTTGCTCAAGACATTGAAGCATAAGAATATAATTAAATTTTACAATTCATGGGTTGATACCAAGAATGAGAATATAAACTTCATTACTGAAATTTTCACCTCAGGAACATTGCGACAATACCGGCAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCCAGGCAGATTTTGGAGGGCCTTTCATATCTTCATAGTCATAATCCACCAGTTATTCATCGAGACCTCAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGCGAGGTGAAAATTGGTGATTTAGGATTGGCGGCCATCCTTCAACAGGCCAATTCAGCTCACAGTGTTATTGGTACCCCAGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAACGAGCTTGTTGATATCTATGCTTTTGGGATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCTTGAAGTTAAAGCCTTTATAGAAAAGTGTATCGCTAATGTATCAGAACGGTTGCCTGCAAAGGATCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAGTGAAAGTATAGGCAGATCTTTAAGACCCGCAACCCATCATTCAGGAAATAAATGTGATATTCAAGCTGTTGGAAAAGGTGTGGTGGATAATTCTGTTGAGACAAGTAGGGAATTCACTGTTGAAGGTCAGAGGAGAGATGTTAATACAATATTTTTGAAACTGCGAATTGAAGATTCCTCAGGTTATATTCGCAATATCCACTTCCCTTTTGATGTCGGAGCTGATACTTCAATCTCAGTTGCCGGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTTCAACTATAGCTAAGATGATTGACTCAGAAATTCGATATCACATTCCTAGTTGGAATCCCAGTGAAATTCCCGTCAATTGTTCTTGTCAAGATCCAGGCAGTACCTCTGAAACTAAGCCTGAGGCTTCTCCTATGGGAAATGAATCTATCACTCCTACTAGCAGTCTTGCGTTAGAAATATTACCTTCAGGTCGTAAATACTGGTCAGACTCACCAAAGGCTGTTGGTGGAAGCTCTCCATCTCGGCATGGTGCTTCAAACTTGTGTTATGAAGTGGATGCGAATGCTGGGGAAGCCAGCTTTGCTGCAAATAGTGCTGAGAAGGAATGCGATGGGACTGCTGATTCCCCTTTCAACAAGAGAAGTATTACATCGGAGTATTTAAAAGCAACTGGTGAAAAATCTTCTCAAGAAGCAATTTCTGGAAGTTTGAAAGATTCTGAAAAAGAATACATCAATAAAATGGCAATAAAACTGGAGAAATTGTTGGTTAAGCAAAGAGAGGAGGTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAAATCTTCTGCAGGAACTTTCTCCAGAAATGTGCCAGAAGGTCCTTAATATATGCAATCTGCAGATGCCTGACCGTGGAATGTAG | 1785 | 0.4112 | MPPDSPEQDDDPENEFAEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLVRNSVDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRQKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDLEVKAFIEKCIANVSERLPAKDLLMDPFLQSDYDSESIGRSLRPATHHSGNKCDIQAVGKGVVDNSVETSREFTVEGQRRDVNTIFLKLRIEDSSGYIRNIHFPFDVGADTSISVAGEMVEELELTDQDVSTIAKMIDSEIRYHIPSWNPSEIPVNCSCQDPGSTSETKPEASPMGNESITPTSSLALEILPSGRKYWSDSPKAVGGSSPSRHGASNLCYEVDANAGEASFAANSAEKECDGTADSPFNKRSITSEYLKATGEKSSQEAISGSLKDSEKEYINKMAIKLEKLLVKQREEVDELKRKHKLAVSNLLQELSPEMCQKVLNICNLQMPDRGM. | 595 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g02850 | 594 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Seca3g02850 | 594 | Gene3D | - | 338 | 426 | - | - | |
| Seca3g02850 | 594 | ProSiteProfiles | Protein kinase domain profile. | 26 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca3g02850 | 594 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 107 | - | - | |
| Seca3g02850 | 594 | FunFam | probable serine/threonine-protein kinase WNK9 | 109 | 289 | - | - | |
| Seca3g02850 | 594 | Pfam | Protein kinase domain | 29 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca3g02850 | 594 | SUPERFAMILY | Protein kinase-like (PK-like) | 28 | 285 | IPR011009 | - | |
| Seca3g02850 | 594 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 291 | - | - | |
| Seca3g02850 | 594 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 7 | 570 | - | - | |
| Seca3g02850 | 594 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Seca3g02850 | 594 | MobiDBLite | consensus disorder prediction | 414 | 437 | - | - | |
| Seca3g02850 | 594 | FunFam | Probable serine/threonine-protein kinase WNK3 | 338 | 429 | - | - | |
| Seca3g02850 | 594 | CDD | STKc_WNK | 24 | 284 | - | - | |
| Seca3g02850 | 594 | Coils | Coil | 541 | 568 | - | - | |
| Seca3g02850 | 594 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672|GO:0006468 | |
| Seca3g02850 | 594 | FunFam | Probable serine/threonine-protein kinase WNK1 | 11 | 107 | - | - | |
| Seca3g02850 | 594 | SMART | serkin_6 | 26 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Seca3g02850 | 594 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 342 | 396 | IPR024678 | GO:0004674|GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g02850 | Seca-Chr3 | 50988653 | 50992944 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g02850 | 102 | 591 | MAP Kinase Kinase Kinase | AT3G48260 | 55.172 | 2.35e-166 | 478 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | WNK_NRBP | Seca3g02850 | Pkinase | 3.6e-51 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g02850 | K08867 | - | gmx:100301899 | 863.218 |