Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02841 ATGTTTGAGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACTTTTGGACAGGTCTTGGAATGCTGGGACAGAGAAAGGAAAGAAATGGTTGCCATAAAAATTGTACGCGGGGTAAAAAAGTATCGAGAGGCAGCCATGATTGAAATTGAGGTGCTGCAACACCTTGGGAAACATGATAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTGTAGCATTCATGCATGACTTACACATGATCCATACTGATCTGAAGCCTGAAAACATACTTCTAGTTTCACCTGAGTATCTTAAAATTCCTGACTACAAGAGTTCATCCAGATCACCAGGCTCCTTTTTCAAGAGAGTGCCCAAGTCTAGTGCTATTAAGGTTATTGATTTTGGTAGCACTACATATGAACGAGAAGATCAGAATTACATTGTATCAACACGTCACTATAGAGCTCCTGAAGTTATTCTTGGACTTGGATGGAGCTATCCATGTGATGTATGGAGTGTGGGTTGTATATTGGTTGAGTTATGCACTGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTTGCCATGATGGAGAGGGTTCTTGGTCCAATACCGCAGCAGATGTTGAAGAGAGTTGACCGACATGCTGAGAAGTATATCCGAAGGGGTAGATTGGACTGGCCAGAGGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTAATGAAGCTTCCTCGACTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACACCTTTTGCAGGGTCTACTCAGATATGACCCTTTTGAAAGACTCACAGCTAGGGATGCTCTGAGACATTCTTTCTTTATGAGAGATCACCTTAGGAGATGA 1035 0.4135 MFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGVKKYREAAMIEIEVLQHLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLHMIHTDLKPENILLVSPEYLKIPDYKSSSRSPGSFFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYIRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFMRDHLRR. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02841 344 Gene3D Transferase(Phosphotransferase) domain 1 66 337 - -
Seca3g02841 344 FunFam Serine/threonine-protein kinase AFC2 1 92 - -
Seca3g02841 344 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 340 - -
Seca3g02841 344 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Seca3g02841 344 FunFam Serine/threonine-protein kinase AFC2 88 337 - -
Seca3g02841 344 CDD PKc_CLK 1 337 - -
Seca3g02841 344 SMART serkin_6 12 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02841 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Seca3g02841 344 Pfam Protein kinase domain 12 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02841 344 SUPERFAMILY Protein kinase-like (PK-like) 4 340 IPR011009 -
Seca3g02841 344 ProSiteProfiles Protein kinase domain profile. 12 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02841 Seca-Chr3 50905681 50909258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02841 17 337 Core Cell Cycle Gene Families AT1G76540 25.672 1.02e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca3g02841 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02841 K08287 - gmx:100808961 683.715