Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02820 ATGTCTATCTCTTCCACTGCCTTCAACTCCCTCACTATGGCAGAATCCTGCCTTCTCTCTTCTCCCTCCTCACTCTTCTATAACAAAGCCAAACACTACCCTTTTTTCTCAATTCCCTCCAAACCCCTCAAACTCCAACTCTCATGCCTCAATTATTCTTCCCCCTCTCTCTCCCTCACTTCCAGAACCCACCGCTCTCCCATGCCCCTTTTCGTCGCCCAAACTTCAGACTGGGCACAACAAGGAGACAACACAGACACAGTCACCCTACAAGACCAATCAGAAGGAGAAGGAGAAGGAGAAGGTGCGAGTGAAACCGAAGCAGGACTTTCGGATTGGGAACCCAACGGCGAAGAAGCGGAAACCGAGGGCGACGAAGAAGGAGGTTTCGTGGAACCACCTGAAGATGCAAAACTCTTCGTTGGAAACTTGCCTTACGATGTTGATAGTCAGAAATTGGCCATGCTTTTCGAGCAGGCTGGAACCGTCGAAATTGCCGAGGTTATTTATAATAGGGAATCTGACCAGAGTCGTGGCTTTGGATTTGTGACCATGAGTACAGTTGAAGAAGCTGAGAAGGCTGTGGACAAGTTCAACCGTTATGATTATGATGGAAGAATGTTGACAGTTAATAAGGCTTCTCCAAGAGGATCTCGGCCTGAACGCCCACCTCGTACCTTTGAACCTGCCTTAAGAGTCTATGTTGGTAACTTGCCATGGGATATTGATAACACTCGGCTGGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCGGGTTGTCTATGACAGAGAGTCTGGTCGATCACGTGGCTTTGGATTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGACGGGAGGACAATCAGAGTGAATGTTGCCGAGGACAGGCCCAGGCGAGGTTCCTTTTGA 951 0.4848 MSISSTAFNSLTMAESCLLSSPSSLFYNKAKHYPFFSIPSKPLKLQLSCLNYSSPSLSLTSRTHRSPMPLFVAQTSDWAQQGDNTDTVTLQDQSEGEGEGEGASETEAGLSDWEPNGEEAETEGDEEGGFVEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRESDQSRGFGFVTMSTVEEAEKAVDKFNRYDYDGRMLTVNKASPRGSRPERPPRTFEPALRVYVGNLPWDIDNTRLEQVFSEHGKVVSARVVYDRESGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVNVAEDRPRRGSF. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02820 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Seca3g02820 316 FunFam 31 kDa ribonucleoprotein, chloroplastic 221 315 - -
Seca3g02820 316 MobiDBLite consensus disorder prediction 112 130 - -
Seca3g02820 316 Gene3D - 74 220 IPR012677 -
Seca3g02820 316 MobiDBLite consensus disorder prediction 75 136 - -
Seca3g02820 316 SUPERFAMILY RNA-binding domain, RBD 224 314 IPR035979 GO:0003676
Seca3g02820 316 Gene3D - 221 316 IPR012677 -
Seca3g02820 316 CDD RRM2_NsCP33_like 232 307 - -
Seca3g02820 316 PANTHER OS02G0815200 PROTEIN 20 311 - -
Seca3g02820 316 SMART rrm1_1 232 305 IPR000504 GO:0003723
Seca3g02820 316 SMART rrm1_1 138 211 IPR000504 GO:0003723
Seca3g02820 316 MobiDBLite consensus disorder prediction 75 94 - -
Seca3g02820 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Seca3g02820 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Seca3g02820 316 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 220 - -
Seca3g02820 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Seca3g02820 316 SUPERFAMILY RNA-binding domain, RBD 133 225 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02820 Seca-Chr3 50710021 50713264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02820 125 313 Eukaryotic Initiation Factors Gene Family AT3G16380 35.644 2.57e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02820 - - gmx:100810381 441.81