Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02816 ATGGCTGGGAAAATGAAAATCTACAACCACCTCTTTCTCCTTTCATTCTTTTCCCTCTTCTTTTTCTCCTCCATCCATGTCGATGCCAAGCTTGATCTCCACCCTTCAGACTCAAAGGCTCTCTTAGCAATCCAAAAAGACCTCCGAGTCAACGGTCAACCTCTAACAACCACCGTTCACCCATGTAACACTGAGGGTGTGTTCTGCGAGAGGAGGCTCTCCAACAACGAGAGTTACTATTTCCTCAGAATCACAAGACTCGTCTTCAATTCGAAGCATCTCAGTGGAGCGCTTTCCTCTGCGATAGGACGCCTCACAGAGCTCAAAGAACTCTCTCTTCCTAACAACAAAATCGTTGACCGAATCCCACCTCAGATAGTTGACTGCAGAAAGCTTGAGATTCTGGACCTCTCTAACAACCTCTTCTCAGGCCAAGTCCCTTCTCAATTATCCTCTCTCATTCGCCTTCGCGTCCTTGATATCTCCTCTAACAAACTCTCTGGAAACTTGAATTTCCTGAGATTTTTCCCCAATCTTGAATCTCTCTCTATAGCTAACAACCTCTTCACTGGAAGAGTCCCTGCTTCTATTCGTTCCTTTCGCAATCTCAGACACTTCAACTTCTCTGGGAACCGTTTCCTCGAAGGTTCTCTGCTTCAATTTGAATCAGAAACAGAAACAATCCCTAAACGCTATATCTTTGCTGAGGATTCAAATGGAGGAGCTCCTGCACCTGCGCCATCAAAGAAAAAATCAAATTCATCTGTTGTTGCTGCTGCTCCTGGTCCTGCTTCACACCACCACAGGCACAAGTCAAGCAAGAGGAAACTAGCTGGCTGGATTGTTGGGTTTGTGGCTGGTGCATTTGCTGGGACTCTTTCTGGCTTCATATTTTCCTTGTTGTTTAAATTGGCTTTGGCTTTGATCAAAGGTGGAGGAAAAGGCTCTGGTCCTGCAATTTATAGTCCCTTGATTAAGAAAGCTGAGGACTTGGCTTTCTTGGAAAAGGAAGATGGGTTGGCTAATTTGCAACTCATTGGAAAAGGTGGCTGTGGAGAGGTTTACAAGGCTGAATTACCTGGAAGCAGCGGTGACAAATGGATTGCCATAAAGAAGATTGTTCAGCCTCCTAAGGATGCTGCTGAGTTGGCTGAAGAAGATAGCAAGCTTCTGCATAAGAAAATGCGCCAGATTCGATCAGAGATTCAGACTGTTGGTCAAATTCGACACAGGAACCTTCTTCCTCTGTTGGCTCATGTGTCTAGGCCTGATTGTCACTACCTTGTGTATGAGTTCATGAAGAATGGAAGTTTGCAGGATAAGTTGAACAATGTTGAAAGGGGTGAAGGAGAGTTGGATTGGATAACAAGACACAAGGTTGCACTTGGTGTAGCTGCTGGTCTTGAATATCTTCACATGAGTCATAGTCCTCGTATAATTCATAGGGACCTTAAGCCTGCAAATATTCTTCTTGATGATGATATGGAAGCTAGGATTGCGGATTTTGGGCTTGCAAAAGCTATGCCGGAGTATCAAACACATATCACAACTTCTAATGTAGCTGGCACTGTGGGATATATAGCACCTGAGTATCACCAGATACTTAAGTTTACTGATAAGTGTGACATATACAGCTTTGGGGTCATACTTGGTGTGTTGGTCATAGGAAAGCTTCCATCTGATGAGTTTTTCCAGCATACAGAAGAGATGAGTTTGGTCAAGTGGATGAGAAAGATGATGACTTCAGAAAATCCAAAGGAAGCAATTGATGCAAAGCTTTTGGGGAATGGATATGAGGAACAGATGCTTCTGGTTTTGAAGATTGCTTGCTTTTGCACCATGGATGATCCGAAGGAGAGGCCCAACAGTAAGGATGTTAGGTGTATGCTGACCCAAATCAAGCACTGA 1908 0.4413 MAGKMKIYNHLFLLSFFSLFFFSSIHVDAKLDLHPSDSKALLAIQKDLRVNGQPLTTTVHPCNTEGVFCERRLSNNESYYFLRITRLVFNSKHLSGALSSAIGRLTELKELSLPNNKIVDRIPPQIVDCRKLEILDLSNNLFSGQVPSQLSSLIRLRVLDISSNKLSGNLNFLRFFPNLESLSIANNLFTGRVPASIRSFRNLRHFNFSGNRFLEGSLLQFESETETIPKRYIFAEDSNGGAPAPAPSKKKSNSSVVAAAPGPASHHHRHKSSKRKLAGWIVGFVAGAFAGTLSGFIFSLLFKLALALIKGGGKGSGPAIYSPLIKKAEDLAFLEKEDGLANLQLIGKGGCGEVYKAELPGSSGDKWIAIKKIVQPPKDAAELAEEDSKLLHKKMRQIRSEIQTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDKLNNVERGEGELDWITRHKVALGVAAGLEYLHMSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPEYQTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSDEFFQHTEEMSLVKWMRKMMTSENPKEAIDAKLLGNGYEEQMLLVLKIACFCTMDDPKERPNSKDVRCMLTQIKH. 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02816 635 MobiDBLite consensus disorder prediction 238 272 - -
Seca3g02816 635 Pfam Leucine rich repeat 107 166 IPR001611 GO:0005515
Seca3g02816 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Seca3g02816 635 SMART serkin_6 340 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02816 635 SUPERFAMILY L domain-like 59 215 - -
Seca3g02816 635 Gene3D Phosphorylase Kinase; domain 1 329 432 - -
Seca3g02816 635 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 79 170 - -
Seca3g02816 635 SUPERFAMILY Protein kinase-like (PK-like) 335 631 IPR011009 -
Seca3g02816 635 FunFam Leucine-rich repeat receptor-like protein kinase 433 635 - -
Seca3g02816 635 ProSiteProfiles Protein kinase domain profile. 340 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02816 635 Gene3D Transferase(Phosphotransferase) domain 1 433 635 - -
Seca3g02816 635 Gene3D Ribonuclease Inhibitor 171 225 IPR032675 -
Seca3g02816 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 634 - -
Seca3g02816 635 Pfam Protein kinase domain 342 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02816 635 Gene3D Ribonuclease Inhibitor 36 170 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02816 Seca-Chr3 50644637 50646544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02816 2 635 Receptor kinase-like Gene Family AT2G31880 62.364 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca3g02816 Pkinase 8.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02816 - - gmx:100811980 924.85