Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02815 ATGGCTAGGAAGGGGAAGGGCCACCTCTTGCTGTTTCCATTCTTGTTACTCTTTTTCTCCACCCATGCCACCCTCCATCTCAACCCTTTACACTCAAAGGCTCTTTCAGCTTTCCTAAAGGACCTAGGAGTCAACGGTCAACCTCAGGAGAAGACCAGGGCAACCAACCACCCATGTGACACAGAGGGCATCTTCTGTGAGAGAAGGCTCTCCAAGTCCAACAACGAGAGTTACTATTTCCTCAGAATCACAAGGCTTGTCTTCAACTCAAAGCACCTCAATGGGGTGCTTTCACCTGCAATAGGACACCTCACAGAGCTCAAAGAACTCTCTCTTCCCAACAACAATCTCTTTGACCGAATCCCCCCACAGATAGTTGGCTGCAGAAAGCTTGAGATTCTGGACCTCTCTAACAACCTCTTCTCTGGCCAAGTCCCTTCTCAATTGTCCTCTCTTATTCACCTTCGCATCCTTGATGTCTCTTCCAACAAACTCTCTGGGAACTTGAATTTCCTGAGGTATTTCCCCAATCTTGAGTCTCTCTCTATAGCCAACAACCTCTTCACTGGGAGACTCCCTGCTTCTATTCGTTCCTTTCACAATCTCAGACACTTCAACTTCTCTGGGAACTGTTTCCTTGAAGATTCTCTGCTACTGAATGAGAGGCTTCAATCTGAATCAGATACAGCCTTCAAACGCTATGCCTTTGCTGAGAGTTCAAATGGAGGAGGAAGGAATAGTGCTCCTGCACTTGCCCCATCAAAATCTCACAAGAAAATTTCTACTGTAGCTGCATCAGCTGCTAGTCCAGGAACAGCAGTTCCCCACCATAAGCACAAATCAAGAAAGAGGAGACTAGCTAGGTTGATTCTTGGGATTGTGGCTGGGGCATTGGCTTTGGCTATATTTGGATTCATTTTCTCTTTACGGTTCAATCTGCCTTTCATCAAGAGAAGAGGAAAGGAATTAGGCCCTGCCATATTTAGTCCCTTGATTAAAAAAGTTGAGGACTTGGATTTCTTGAAGAAAGAAGATGGACTGGCTTCATTGGAAATTATTGGAAGAGGTGGGTGTGGAGTGGTTTACAAGGCTGAATTACCAGGAAGCAATGGCAAAATGATTGCCATCAAGAAGATTACTCAACCTTCTAACCATGCTGTTGAATTGGCTGAAGGATACAGAAAGCTTCTAAATATGAAAATGCGCCAAATTCGAGCAGAGATTAACACTGTTGGTCAAATTCGACACAGGAACCTTCTTCCTCTTCTGGCTCACGTTTCCAGGCCTGATTGCCACTGCCTTGTGTATGAGTTCATGAAGAATGGAAGTTTACAGGATGTGTTGGACAAAGTTAAATTGGGTGAAAGGGAGTTGGATTGGTTGTCCAGGCACAAGTTTGCACTTGGAATAGCAAATGGCCTTGAATACCTTCACTTGTGCCACAGACCTTGTATAATTCACAGAGACATCAAGCCTGCAAACATTCTTCTTGATGATGATATGGAAGCTCGCATAACAGACTTTGGGCTTGCAAAAGCAATGCCAGAGGCTCATACACACATCAGAACTTTACATGTAGCTGGTACTGCAGGATATATAGCACCAGAGTGTAGGCGGATTCCCAAGTTCACTGACAAGTCTGACGTATATAGCTTTGGGATTGTGCTTGCTGTCTTGGTCACAGGAAAGGTTCCTTCGGATGAGTTTTTCCAGCACACAGGAAATATGAGTTTGGTCAAGTGGATGAGGAAAGTGATGAGTTCAGAAAATCCAAAGGAAGCAATTGATGCAAAGCTTATGGGGAAAGGATATGAGGAACAGATGCTTCTGGTTTTGAAGATTGCCTGCTTTTGCACCATGGATGATCCAAAGGAGAGGCCTAACAGTAAGGATGTTAGGTGTATGCTGTCCCAAATCAAGCACTGA 1926 0.4465 MARKGKGHLLLFPFLLLFFSTHATLHLNPLHSKALSAFLKDLGVNGQPQEKTRATNHPCDTEGIFCERRLSKSNNESYYFLRITRLVFNSKHLNGVLSPAIGHLTELKELSLPNNNLFDRIPPQIVGCRKLEILDLSNNLFSGQVPSQLSSLIHLRILDVSSNKLSGNLNFLRYFPNLESLSIANNLFTGRLPASIRSFHNLRHFNFSGNCFLEDSLLLNERLQSESDTAFKRYAFAESSNGGGRNSAPALAPSKSHKKISTVAASAASPGTAVPHHKHKSRKRRLARLILGIVAGALALAIFGFIFSLRFNLPFIKRRGKELGPAIFSPLIKKVEDLDFLKKEDGLASLEIIGRGGCGVVYKAELPGSNGKMIAIKKITQPSNHAVELAEGYRKLLNMKMRQIRAEINTVGQIRHRNLLPLLAHVSRPDCHCLVYEFMKNGSLQDVLDKVKLGERELDWLSRHKFALGIANGLEYLHLCHRPCIIHRDIKPANILLDDDMEARITDFGLAKAMPEAHTHIRTLHVAGTAGYIAPECRRIPKFTDKSDVYSFGIVLAVLVTGKVPSDEFFQHTGNMSLVKWMRKVMSSENPKEAIDAKLMGKGYEEQMLLVLKIACFCTMDDPKERPNSKDVRCMLSQIKH. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02815 641 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Seca3g02815 641 Gene3D Ribonuclease Inhibitor 169 225 IPR032675 -
Seca3g02815 641 SUPERFAMILY L domain-like 77 215 - -
Seca3g02815 641 FunFam Leucine-rich repeat receptor-like protein kinase 439 641 - -
Seca3g02815 641 SMART serkin_6 347 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02815 641 Gene3D Ribonuclease Inhibitor 31 168 IPR032675 -
Seca3g02815 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Seca3g02815 641 CDD STKc_IRAK 353 639 - -
Seca3g02815 641 SUPERFAMILY Protein kinase-like (PK-like) 331 636 IPR011009 -
Seca3g02815 641 Gene3D Phosphorylase Kinase; domain 1 332 438 - -
Seca3g02815 641 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 80 640 - -
Seca3g02815 641 Pfam Protein kinase domain 350 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02815 641 ProSiteProfiles Protein kinase domain profile. 347 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02815 641 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 78 169 - -
Seca3g02815 641 Gene3D Transferase(Phosphotransferase) domain 1 439 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02815 Seca-Chr3 50605228 50607153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02815 9 641 Receptor kinase-like Gene Family AT2G31880 58.464 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca3g02815 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02815 - - gmx:100811980 810.446