Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02803 ATGCCTCAATGGGATTGCTTGCTCATTGCTCCATGCTCTTCTCTTTCTGAAGATAAGATAATGATGGATGGACGGCGGCATTCAGTTGATATTCCTATTTCTAAGACTCTTGTAGCACTGAGGAGAGTTAGGTCATTGAGGGATCCATCAACTAATTCTATGAGCAAACTCTCCACTTTGGTTGATAATGTGCACTGGGAAAACGACGGTTTAGGCAATGGGATTTCTCTGCTGTTTCCGGATGCTGCTCGTGCATGTGATTCTGATGATAATGTTGCTTTTAGATCAAGGGATTTAGGTTATAAGGGACAAAAAGAGCAGGGTGCTGCTGATTTTGAATTGAATTGTGGCCTGTTGAAATCTAGGCTGAAGCCTAGTGGGATGTCATGTCATGATGGCAAACAAGATGATGAACAAGTTCACTCTGATCCAAATCGGCAATGCATTTCTGGAAGTAAATCACCAAGTGAAAGCTGTGGTAGTAACCATGGGGGTAAAGGATTGGATTTGGCTTGCATCATGCCTCCTAGTAATAATTTCAAGGATGGGGAATCATGCTATAGGACAAGTACCAGATCATCTCAATTAGGGAGAATAGATCACTCTAGGTTAGCCATCCGCAAGAATCAAGTAAAACCGTCAGAAGTTGTGGGTGATATTGTTAGCCATTTAGGCAGTCCAAGCCTTTCTGTTCGTGACACTTTCTCGCCCCATGGTGCCTCTGTAGGTATAAATCAAGATTTTGATGTTCTAGATAATAATGATGATGATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAACCAAATCTTTATAGTGAGATGGAAGACCGTCCCTTGATATTGCACAGCATTGATGACACAGATCTTCATGGACATAGAAGCACGAGACACAATGGTGGTGAAATTAGTCCAAATTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGACCTAAGTCATTTAGTGATCTGGTAGGACAAAATGTGGTAGTAAGGTCACTTTTGGGTGCAATCTCCAGAGGAAGGATAGCATCATTTTATCTCTTTCATGGTCCTCGCGGTACAGGCAAGACATCTGCTTCTAGGATATTTGCTGCTGCACTGAATTGCCTTTCTTCTGTTCAGGAGCAAAGACCATGTGGTCTGTGCAGAGAATGTATTTTATTCTTTTCTGGAAGAAGTAAAGATTTTAAGGAAGTGGATTCTGTGAGAATCAATCGTACAGACCAGGTTAAATCCCTTGTTAAGAATGCATGTATCCCTCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAATGGGGAGATATGGGCAAGCTTATCAAATAACCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTAGAAGTGCAGTTTGCAGGGCTCAGAGGTATCACTTTCCTAAGGTCAAGGATGCTGATATTGCATGCAGATTAGAAAAGATTTGTGCCGAAGAAGGTCTTGATTTTGAGCAGGCTGCTTTGGACTTCATTGCTACAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGTTTGGTAAAACGATCAAGCTTTCCTTAGTATATGAGCTTACTGGGGTCATTTCTGATGATGAATTGTTCGATTTGCTTGATCTGGCTTTGTCATCTGACACTACTAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTGTCACAGCTGGCAAATCTCATTATGGACATCCTTGCGGGGAAATGTGAAAATGGTAGTTCTGAAGTCAGGAGTAAATTTTCTAGTAGATATACCTCGGAAGCAGACCTTCAGAAACTAAGCCATGCATTAAGAATACTTTCTGAAACTGAGAAACAGCTTAGAATTTCAAAAAATCAAACAACATGGTTCACTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCCTTCCATGGATGCAGATGATACCAAGTTGTGTTTGAAAGGTGCATGCAATGGAGGGCAGAGCTTGGAGCATGTTGCTACAGATCAATGTGATAACAGTTCATATAGATTAGGAGTGCTGGAGGATCACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAGTCAGCTAAAAACTTTCCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGAAGTCTTACTGTTGCTGAGTTGGAGTTCTGCCATCGTCACCATGTATCCAAGGCTGAGAAATCATGGAAATTGATTGCAAGTTTCTTGCAGTTCGTGTTGGGTTGTAACATTGAGTTGAGGATCACTTATGTACCTCGTACTTCTGATTCTAAGTATGCTAAACTGAAGAGGACATCTTTTAGAATCTTTGGTTGTTCACGCAGAATACAGCAGAAATCATTATCGTCTAATGAACTAGGAAGTGAATTAGACTATGCTGACTACACCTCTCAAAATCCAATGATGAAGGATAAAACTCTCAGTTCTTCCTCTGATTGTGGATCTCGGGTGCCACATCGAGAGTCTTACCATGGAATTGATGCTGTAACAACTTTAAGAAGTTGTGAAGGGAATTTACTCGGCTCAGGAGAAAGATTTTTTAATAGGTCTTTTCAAGAAACTATGGGAATATCATGTTCTGGAGTTGATTCCTCTAAGGATGAGGGATGCAAATGTGCACATGTTCCATCATCAATCCTCGATTCAGATAATAATCATTCAACCTGTTTTCCTCAAACTCTCTGGCTACAAAAGAAGTTCCGTACTTCATATTCATCCAAGTCGACTTTTCAGGGTATCCAACAGAAAGATTTTGTTTTATCTAGCCCAAACTGTACATGTTCTGAGACATATACCTATGCTAATTAA 2934 0.4032 MPQWDCLLIAPCSSLSEDKIMMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSTLVDNVHWENDGLGNGISLLFPDAARACDSDDNVAFRSRDLGYKGQKEQGAADFELNCGLLKSRLKPSGMSCHDGKQDDEQVHSDPNRQCISGSKSPSESCGSNHGGKGLDLACIMPPSNNFKDGESCYRTSTRSSQLGRIDHSRLAIRKNQVKPSEVVGDIVSHLGSPSLSVRDTFSPHGASVGINQDFDVLDNNDDDGCGISCCWSKSPRFREPNLYSEMEDRPLILHSIDDTDLHGHRSTRHNGGEISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVQEQRPCGLCRECILFFSGRSKDFKEVDSVRINRTDQVKSLVKNACIPPVSSRFKVFIIDECQLLNGEIWASLSNNLENLSQHVVFVMITPDLDKLPRSAVCRAQRYHFPKVKDADIACRLEKICAEEGLDFEQAALDFIATKSCGSVRDAEMMLDQLSLFGKTIKLSLVYELTGVISDDELFDLLDLALSSDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGSSEVRSKFSSRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLQLSSVDYPSMDADDTKLCLKGACNGGQSLEHVATDQCDNSSYRLGVLEDHKGTLDSIWYKATEICQSSQLKTFLRKKGKLSSLHVDRSLTVAELEFCHRHHVSKAEKSWKLIASFLQFVLGCNIELRITYVPRTSDSKYAKLKRTSFRIFGCSRRIQQKSLSSNELGSELDYADYTSQNPMMKDKTLSSSSDCGSRVPHRESYHGIDAVTTLRSCEGNLLGSGERFFNRSFQETMGISCSGVDSSKDEGCKCAHVPSSILDSDNNHSTCFPQTLWLQKKFRTSYSSKSTFQGIQQKDFVLSSPNCTCSETYTYAN. 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02803 977 SUPERFAMILY post-AAA+ oligomerization domain-like 560 663 IPR008921 GO:0003677|GO:0006260
Seca3g02803 977 CDD HLD_clamp_pol_III_gamma_tau 491 554 IPR045085 -
Seca3g02803 977 MobiDBLite consensus disorder prediction 127 162 - -
Seca3g02803 977 FunFam DNA polymerase III subunit gamma/tau 492 554 - -
Seca3g02803 977 FunFam Protein STICHEL-like 1 isoform C 555 668 - -
Seca3g02803 977 Pfam DNA polymerase III, delta subunit 333 491 - -
Seca3g02803 977 Gene3D - 492 554 - -
Seca3g02803 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 540 IPR027417 -
Seca3g02803 977 Gene3D - 311 489 IPR027417 -
Seca3g02803 977 MobiDBLite consensus disorder prediction 144 161 - -
Seca3g02803 977 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 318 752 - -
Seca3g02803 977 NCBIfam DNA polymerase III subunit gamma/tau 317 664 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Seca3g02803 977 Gene3D - 555 668 - -
Seca3g02803 977 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02803 Seca-Chr3 50444313 50449142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02803 308 556 Core DNA Replication Machinery Family AT1G21690 26.587 2.43e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02803 - - gmx:100819111 1417.91