Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02799 ATGGCATCGAGCGAGGGGTTTCTTACGGATGGTCAGAGAGAAATGTTGAAAATTGCGAGTCAGAATGTGGAGAATTTGTCGTCGTCGCCGAAATCTCCGTCATCCTTGCTTGGTGAACATCATCATCATCATATGAGAGCTCCTTCTGGGGGTGGTAAGGCACAAACTTCCGGAATTGCTGTCAGGCATGTTCGCCGATCGCACTCGGGAAAGTTTGTGCGGGTCAAGAAGGACGGTGCAGGTGGTAAGGGCACTTGGGGAAAATTGCTTGATACCAATGGTGAATCTCATATAGACAGAAATGATCCAAACTATGACAGTGGTGAGGAACCTTATCGATTGGTTGGGTCTACTGTTACTGATCCGTTAGATGAATTCAAGAAAGCCATAGTATCCATCATAGAGGAATATTTCAGTACCGGGGACTTCAACTTGGCTGCATCTGACCTCAGAGAACTTGGCTCAAATGAATATTATCCATACTTCATTAAGCGTCTTGTGTCCATGGCCATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCGGTTTTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTCAGGATGGATTTTTTATGCTTATTGAATCAGCTGATGATCTTGCGGTGGACATACTAGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGATATCCTTCCTCCAGCCTTTCTTGCCAGGGCCAAGAAGTCTCTTCCAGAATCTTCCAAGGGAGGTCAGGTAATCCAGATTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAAGCGATGGGGTGGTAGCACTCACTTCACTGTTGAAGATGTGAAGAAGAGAATTGCTGATTTACTAAGAGAATATGTGGATAGTGGTGACACATTTGAAGCCTGTAGGTGTATACGTGAGTTAGGGGTTTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTCTAGTACTTTCCATGGAGATCCACTCAGCAGAACCTCTTATGTTTAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGTCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGTCCTAGATGATCTTGCTCTTGATATTCCTTCAGCTAAAACTTTGTTTCATTCGTTGGTACCTAAAGCTATATCAGAAGGATGGCTCGATGCTTCATTTATGAAATCCTCTGGGGAAGATGGGGATATTCAAGTTGAAGATGAAAAGGTGAGGAAGTATAAAAAGGAGGTTGTAACTATTATTCATGAATATTTTCTCTCTGATGACATCCCTGAGCTCATTCGAAGCCTTGAGGATCTTGGGGCACCTGAGTATAACCCGATATTTTTGAAGAGGCTAGTAACTCTTGCTATGGACAGAAAAAATCGGGAAAAGGAAATGGCATCAGTACTACTATCTGCTCTTCATATTGAGATCTTCTCAACTGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACTGCACTGGATATATTGGATGCTTCAAATGAACTTGCTCTTTTTTTAGCTCGGGCTGTGATTGATGACGTACTGGCCCCTCTGAACCTGGAAGAAATTGGAAGCAGGTTGCCCCCAAAATGCAGTGGGAGTGAAACTGTACGGATGGCTCGTTCACTTGTTGCTGCTCGTCATGCCGGTGAGAGGCTGTTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTGGAAGATGCTAAGGACAAGATCATGAAGCTCTTGGAGGAGTATGAGAGTGGAGGTGTTGTGGGTGAAGCATGCCAGTGTATTCGTGACCTAGGAATGCCTTTCTTCAACCATGAGGTTGTGAAGAAAGCTTTGATTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGATCTTCTGCAGCAATGTTTTAGTGAAGGTCTGATCACCATCAATCAGATGACTAAAGGGTTCACCCGAATCAAGGATGGTCTTGATGATCTTGCTCTGGACATTCCGAATGCAAGGGAAAAATTCAGCTTCTATGTGGAGCATGCCCTGAGGAAGGGCTGGCTTGTACCATCATTTGATTCGACTGCCACGGATGTCTAA 2121 0.4446 MASSEGFLTDGQREMLKIASQNVENLSSSPKSPSSLLGEHHHHHMRAPSGGGKAQTSGIAVRHVRRSHSGKFVRVKKDGAGGKGTWGKLLDTNGESHIDRNDPNYDSGEEPYRLVGSTVTDPLDEFKKAIVSIIEEYFSTGDFNLAASDLRELGSNEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIQDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAKKSLPESSKGGQVIQIAEKSYLSAPHHAELVEKRWGGSTHFTVEDVKKRIADLLREYVDSGDTFEACRCIRELGVSFFHHEVVKRALVLSMEIHSAEPLMFKLLKEAAEEGLISSSQMVKGFSRLAEVLDDLALDIPSAKTLFHSLVPKAISEGWLDASFMKSSGEDGDIQVEDEKVRKYKKEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKRLVTLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVGEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQQCFSEGLITINQMTKGFTRIKDGLDDLALDIPNAREKFSFYVEHALRKGWLVPSFDSTATDV. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02799 706 Gene3D - 275 408 - -
Seca3g02799 706 Gene3D - 574 703 - -
Seca3g02799 706 PANTHER PROGRAMMED CELL DEATH 4 3 700 IPR039778 GO:0045892
Seca3g02799 706 FunFam programmed cell death protein 4 413 567 - -
Seca3g02799 706 MobiDBLite consensus disorder prediction 23 60 - -
Seca3g02799 706 ProSiteProfiles MI domain profile. 586 705 IPR003891 -
Seca3g02799 706 ProSiteProfiles MI domain profile. 423 544 IPR003891 -
Seca3g02799 706 MobiDBLite consensus disorder prediction 93 107 - -
Seca3g02799 706 SUPERFAMILY ARM repeat 583 700 IPR016024 -
Seca3g02799 706 MobiDBLite consensus disorder prediction 84 109 - -
Seca3g02799 706 SUPERFAMILY ARM repeat 123 283 IPR016024 -
Seca3g02799 706 ProSiteProfiles MI domain profile. 289 410 IPR003891 -
Seca3g02799 706 Pfam MA3 domain 425 534 IPR003891 -
Seca3g02799 706 Pfam MA3 domain 291 401 IPR003891 -
Seca3g02799 706 Pfam MA3 domain 126 237 IPR003891 -
Seca3g02799 706 Pfam MA3 domain 588 695 IPR003891 -
Seca3g02799 706 SMART ma3_7 424 535 IPR003891 -
Seca3g02799 706 SMART ma3_7 290 401 IPR003891 -
Seca3g02799 706 SMART ma3_7 126 237 IPR003891 -
Seca3g02799 706 SMART ma3_7 587 696 IPR003891 -
Seca3g02799 706 SUPERFAMILY ARM repeat 286 407 IPR016024 -
Seca3g02799 706 SUPERFAMILY ARM repeat 421 580 IPR016024 -
Seca3g02799 706 FunFam programmed cell death protein 4 117 268 - -
Seca3g02799 706 Gene3D - 118 266 - -
Seca3g02799 706 Gene3D - 415 566 - -
Seca3g02799 706 ProSiteProfiles MI domain profile. 125 246 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02799 Seca-Chr3 50405154 50408985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02799 590 686 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 8.61e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02799 - - gmx:100815729 1267.29