Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02796 ATGGCAGGTTCAGAGGCAAACGGCGACGTTTTCCCATGGCTGAAATCGATGCCGGTAGCACCAGAGTACCGGCCAACCGCGGCGGAGTTCGAAGATCCAATTGCTTACATTTTCAAGATCGAGAAAGAAGCTTCAAAGTACGGCATCTGCAAAATCATTCCACCGTTCCCACCGTCGTCAAAGAAAACCGCCATAGCCAACCTAAACCGTTCACTCCCCAACTCCACATTCACGACACGTCAGCAGCAGATCGGGTTCTGTCCCCGTAAGCCCCGCCCTGTGCAACGCCCCGTTTGGCAGAGCGGTGACCACTACACCTTTCATGAGTTCGAGACCAAGGCCAAGTCCTTTGAGAAAACTTACCTGAAGCGTCACCATAACAAGAGCAGTAGTAAAAATCAAAATCCCCTTGAAACTGAGACACTCTTCTGGAAGGCCACCGTAGACAAACCCTTTTCCGTTGAATATGCCAATGACATGCCTGGCTCTGCTTTCTCCCCCAAATGCCGTCACGCTGGTGAGCCTGCCTCGCTTGCTCACACTGCTTGGAACATGAGAGGGGTTTCAAGGGCCAATGGTTCTTTATTGAGGTTCATGAAGGAGGAGATTCCTGGGGTAACTTCCCCAATGGTGTATGTTGCCATGCTCTTCAGCTGGTTTGCTTGGCATGTCGAGGACCATGACCTTCACAGCTTGAATTACCTCCACATGGGTGCTGGAAAGACCTGGTACGGCATCCCCAGAGAAGCTGCCGTCGCATTTGAGGAAGTTGTTAGGGTTCATGGCTATGGCGGAGAGATAAACCCTCTCGTTACTTTTGCCATTCTTGGTGAGAAAACCACAGTAATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACGTTTCCAAGAGCCTACCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCTGGGGGACTTTGTGCTGAACCTCGAAGTTCTCGTCTTAAAGATAAGAAGAAGGATGAAGGAGAAACTGTAATTAAAGAATTATTTGTCCAGGATGTGGTACAGAACAATGATCTGCTTCATGTACTCGGAAAAGGTTCTTCTGTAGTACTTCTTCCTCGCAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTATTGGTTGCCAACAACGAAAAGTGAACCCTGGGTTTTCTATCAATGTAAGCAATTCCGAGGGAATAAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTGTTCAACAGGAATCATGGAATGAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTACATTGGGTGAAAGGAAAAGGATTTCCTCGTTCAATGCAAATGGTAACACAAGCACTTCAGGTTCTGATCCACAAAGAGACACTGAAAGTGAAACCAGTGAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAGCAATAAATTTACTGTTGCAGATGAAGATGCAAATATTCCTGAGCCAAATATGTATACAGGGTGGACCAAAAAGAATGCCCAAGATGGTTTATACAATGCTTCTGTTCAATCTGCTCATGACCAGAGACAGACTGCAGATCGGAATTATGAGGATGCTTTAAATACTGAAAGAGGAAAAGGCAATACAGCTCTTGGATTATTGGCTTCAGCATATGGAAACTCTTCTGACTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGTTGAAGGTCATGGATCAAATGTGATGAACTCTACATCAGGAAGATTACCTTCTCATTTTCAAGATTCCCATGCTAATCCCATGGCTAGACTTGATAGGGGAGATGATATTCCTTCAAAGAGTGCCAGTTATGAGGATTATATGCATTATAGATTTGAGTATAATTTGAGTCATCAGTCTTTTGACCACTCTGTTGAGAAACAGGATTATAAACTCACTTCAGGAGTTGCATTTAAAAATAAAAGGGCAGTGCCTAATCCCACCTCTAATTGTTCCCAAGACGCTCATGATGCTGAAAATTCATTGTCAGTCAAGGCTATGGTCCCTGTCAATAATAAAAATGCTTTGGTACCACAGACTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCGAAGTTGGCAGCAGAAGAATTGGGGATTGATTACATGTGGAAGAATATTGCATACAGGCATGCCACCAAGGAGGATGAGGAGAGGATCCAGTCAGCCCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTACAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCACCCGTAGAACCAAAAGTCTATCGGAGAAGGGCCAACAAGCAGAAAAAGGTAGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTGTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGATATCACCTGATGAGAAAATTGAGAGATCGGAAAGTACCCCCAAAAGCGAAACTAATATCAGAAAATCAGGTAGGAAAAGGAAAATGACTGTAGAGAGTAAGCAAACCAGGAAAGGAAGTTTTGCTGAGAAAGATGTGGTTTCGGATAATTCCACTGAAGATGAACCCAAGCCAAAGAGGATTGTTAGAAGCAAGCAAGCTGGGCATATTGAGAAAGATGGTGCAGCTTTGGATGGGGATGATTATCCTCCATATCATCGTATAAAACCCATAAACAAGCAAACAAATTGCACTGAAAGTGATGCAGTTTCTGATGATTCGCATGATAATAAATATCACATACGGGATAGAAGGAATTTTAAGGTCAAAAAAGCTAAATTTATTGACAATGATGTGACTTCAGATGATACATTGGACCATGATTCTGATTGGCAGCAGAGGGGAGAACTTAGAAGCAAGCCTGGTGAAGACACAGAGAGAGATTCAATTTCAGAGGATTCTTTGGATATTGGCTCCCTTCAGCTGCACGGGAAGACTTCTAAAAGCAAGCATGCGAAATACATTAGTGAAGAAGATGCAACTTCTGATGACCAAATGGAGAATCATTGTCAGAAGCAGCAAAGGAGAATTCCTAAAAGCAGGCAAGGCAAGTGCCTAGATGAAAAAGATATAATGATATCTGATGACCAACTGGAGCTGAACATGCAGAAGCTGCGTCGGAGGAATCCTAAAAATAAGCAAGCCAAACACCTCACTGTAGAGGATACCATATCAGATGACCAAGTGGAGGCCCATTGTCGCAAGTATCAAAGTAGGACTCCTAAAGGCAGGCAAGCCAAATGTGTAGCAGGGGAAAATGTAATGTCTGATGACCAATTGGAGGATGACTTTCAGAAGCAGCAAACAAGTTTTTCTAGGCGAAGGCAAAACAAAGGCATTGATAGAGAAGTTAAAAAAATAATGTCTGATGACCGATTGGAGGATCACCTTAAGAAGCCACAGAGAAGATTTCCTAGAAGCAGACAAAACAAACGCATTGATAAAGAAGTTATGGATGACTTGGCAGAAAATAATTCTCATCTACTACTACATAGAACTCCTAAAAGGAAGCAAGTTGAATGCATGGATGAAGATGATATGAAATCAGATGACGAAATGAAAGATGATTCTCCTCAGCATCACAGGAGAACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCTCTCCAAGTGAAAAACCAGACATCTCGGACAGTAAAACGAGGGGCTCGGATGCTGATGAAATCAAAGGCTTCTCAGCAAGTAAAACAGCCTTCTCATTTGCGGAATAAGCAATCTGGTAACTCCAGAGAGTTTAATTTACATATGGAAGAGGAAGAAGGTGGACCTAGCACGCGCCTTAGGAAGAGAGTATCTAAAGCTCAGGAGTCTGAAGGAAAATTGAAAGACAAGCAAACGAAAAGGAAAAAGGTGAAGAACGCTACAGCTGCAAAGGTATCAGCTGGCCATGCCAAAATGAAAGATGAGGAATCAGAATACCAGTGTGACATTGAGGGGTGCACAATGAGTTTTAGGTCAAAACAGGAGCTGGTGCATCATAAGAAAAATATCTGTCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGCCCCTTGAGGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGTATGTGCTGAGCCAGGCTGTGGGCAAACTTTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCAGCAAAAAAGTGTCGTCAATAG 4833 0.4322 MAGSEANGDVFPWLKSMPVAPEYRPTAAEFEDPIAYIFKIEKEASKYGICKIIPPFPPSSKKTAIANLNRSLPNSTFTTRQQQIGFCPRKPRPVQRPVWQSGDHYTFHEFETKAKSFEKTYLKRHHNKSSSKNQNPLETETLFWKATVDKPFSVEYANDMPGSAFSPKCRHAGEPASLAHTAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGIPREAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGLCAEPRSSRLKDKKKDEGETVIKELFVQDVVQNNDLLHVLGKGSSVVLLPRSSVDISVCSKLRIGCQQRKVNPGFSINVSNSEGINSSKGFVSDDLVFNRNHGMKQEKSFYSVKDKFTTLGERKRISSFNANGNTSTSGSDPQRDTESETSEGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTVADEDANIPEPNMYTGWTKKNAQDGLYNASVQSAHDQRQTADRNYEDALNTERGKGNTALGLLASAYGNSSDSEEDQGDSDIAVEGHGSNVMNSTSGRLPSHFQDSHANPMARLDRGDDIPSKSASYEDYMHYRFEYNLSHQSFDHSVEKQDYKLTSGVAFKNKRAVPNPTSNCSQDAHDAENSLSVKAMVPVNNKNALVPQTDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLAAEELGIDYMWKNIAYRHATKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSPASSPVEPKVYRRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDCEDVEDEKSLHGWISPDEKIERSESTPKSETNIRKSGRKRKMTVESKQTRKGSFAEKDVVSDNSTEDEPKPKRIVRSKQAGHIEKDGAALDGDDYPPYHRIKPINKQTNCTESDAVSDDSHDNKYHIRDRRNFKVKKAKFIDNDVTSDDTLDHDSDWQQRGELRSKPGEDTERDSISEDSLDIGSLQLHGKTSKSKHAKYISEEDATSDDQMENHCQKQQRRIPKSRQGKCLDEKDIMISDDQLELNMQKLRRRNPKNKQAKHLTVEDTISDDQVEAHCRKYQSRTPKGRQAKCVAGENVMSDDQLEDDFQKQQTSFSRRRQNKGIDREVKKIMSDDRLEDHLKKPQRRFPRSRQNKRIDKEVMDDLAENNSHLLLHRTPKRKQVECMDEDDMKSDDEMKDDSPQHHRRTLRSKQSKPKTLQQMKQANSLQVKNQTSRTVKRGARMLMKSKASQQVKQPSHLRNKQSGNSREFNLHMEEEEGGPSTRLRKRVSKAQESEGKLKDKQTKRKKVKNATAAKVSAGHAKMKDEESEYQCDIEGCTMSFRSKQELVHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKCRQ. 1611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1156 1190 - -
Seca3g02796 1610 ProSitePatterns Zinc finger C2H2 type domain signature. 1549 1571 IPR013087 -
Seca3g02796 1610 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1411 1431 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 975 1083 - -
Seca3g02796 1610 ProSitePatterns Zinc finger C2H2 type domain signature. 1519 1541 IPR013087 -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 502 530 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1105 1139 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1334 1350 - -
Seca3g02796 1610 Coils Coil 1455 1475 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1105 1190 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1334 1484 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 672 688 - -
Seca3g02796 1610 ProSitePatterns Zinc finger C2H2 type domain signature. 1579 1603 IPR013087 -
Seca3g02796 1610 SMART cupin_9 177 346 IPR003347 -
Seca3g02796 1610 SMART c2h2final6 1517 1541 IPR013087 -
Seca3g02796 1610 SMART c2h2final6 1547 1571 IPR013087 -
Seca3g02796 1610 SMART c2h2final6 1494 1516 IPR013087 -
Seca3g02796 1610 SMART c2h2final6 1577 1603 IPR013087 -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1432 1465 - -
Seca3g02796 1610 FunFam Probable lysine-specific demethylase ELF6 13 350 - -
Seca3g02796 1610 SUPERFAMILY beta-beta-alpha zinc fingers 1557 1602 IPR036236 -
Seca3g02796 1610 ProSiteProfiles Zinc finger C2H2 type domain profile. 1517 1546 IPR013087 -
Seca3g02796 1610 SUPERFAMILY beta-beta-alpha zinc fingers 1518 1550 IPR036236 -
Seca3g02796 1610 FunFam Probable lysine-specific demethylase ELF6 1574 1603 - -
Seca3g02796 1610 Pfam jmjN domain 21 54 IPR003349 -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 653 705 - -
Seca3g02796 1610 ProSiteProfiles Zinc finger C2H2 type domain profile. 1577 1608 IPR013087 -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1268 1320 - -
Seca3g02796 1610 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1187 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 1376 1401 - -
Seca3g02796 1610 SUPERFAMILY Clavaminate synthase-like 101 360 - -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 502 518 - -
Seca3g02796 1610 FunFam Probable lysine-specific demethylase ELF6 1544 1573 - -
Seca3g02796 1610 Gene3D Cupin 13 350 - -
Seca3g02796 1610 ProSiteProfiles Zinc finger C2H2 type domain profile. 1547 1576 IPR013087 -
Seca3g02796 1610 SMART JmjN_1 19 60 IPR003349 -
Seca3g02796 1610 MobiDBLite consensus disorder prediction 975 1060 - -
Seca3g02796 1610 ProSiteProfiles JmjC domain profile. 177 346 IPR003347 -
Seca3g02796 1610 Gene3D Classic Zinc Finger 1513 1603 - -
Seca3g02796 1610 Pfam JmjC domain, hydroxylase 210 328 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02796 Seca-Chr3 50355959 50365646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02796 794 895 C2H2 Transcription Factor Family AT5G04240 33.333 3.64e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g02796 JmjC 5.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02796 - - gmx:100775271 2462.18