Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02791 TATTATTTAAGGTCTGGGGGTTGTAAGTTTAACCACACAAGAGGAAAGTGTTCAAGTTTAACAGCCCCGGCTTCAGAGCTTAACTTCCTCGGTCTACCCATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGTTGTTGGAGACATTATAAATGAAACTGCTCCCTTTATTGCCAAGGATACTTTCGCCAGACTCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCAAATCAATAGATTTCCATCTAGCAAGGGACTTCCTATTATATTATCAGCGCCTGTCTATTTATCTGAGAGGAGTATACATCCACCTTCATCATATGTCGTGAACAACCCTGCTATTGAAAGAAATGTTTATATGCACCATAAAAAGCCGATTCCGGTTGACGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAATTTAAATCTAATTGTAGATTTCACCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACGCATTACAGCCGATATGGAATATGA 657 0.4247 YYLRSGGCKFNHTRGKCSSLTAPASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTVVGDIINETAPFIAKDTFARLQGFLPKVLNGMDIRQINRFPSSKGLPIILSAPVYLSERSIHPPSSYVVNNPAIERNVYMHHKKPIPVDEFPERPGEPECSYFLKTGDCKFKSNCRFHHPKNRVTRLPPCNLSDKGLPLRPDQNVCTHYSRYGI. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02791 218 Gene3D - 3 69 - -
Seca3g02791 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 185 IPR000571 GO:0046872
Seca3g02791 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 38 61 IPR000571 GO:0046872
Seca3g02791 218 Gene3D - 128 194 - -
Seca3g02791 218 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Seca3g02791 218 PANTHER PROTEIN PHOSPHATASE RELATED 1 218 - -
Seca3g02791 218 SUPERFAMILY CCCH zinc finger 35 63 IPR036855 GO:0046872
Seca3g02791 218 SUPERFAMILY CCCH zinc finger 163 187 IPR036855 GO:0046872
Seca3g02791 218 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Seca3g02791 218 SMART c3hfinal6 158 185 IPR000571 GO:0046872
Seca3g02791 218 ProSiteProfiles Zinc finger C3H1-type profile. 158 186 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02791 Seca-Chr3 50277737 50279995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02791 1 61 C2H2 Transcription Factor Family AT3G02830 40.299 1.16e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g02791 zf-CCCH 5.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02791 - - gmx:100809626 313.538