Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02790 ATGCTAGAAGCAGAAACTAGGGAATCTGCCTCCAATTTGTACACTTCATTGGAAGAGAAATCAACCTCCGGGCAAAATCTTGCTACAGCTTCTGGTTTTTTAAAAAATCAAGATTTTGATATTTTCTGGGGTTGTAAGTTTAACCACACAAGAGGAAAGTGTTCAAGTTCAACAGCCCCGGCTTCAGAGCTTAACTTCCTCGGTCTACCCATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGTTGGAGACATTATAAATGAAACTGCTCCCTTTATTGCCAATGATACTTTTGCCAGACTCCAGGTGTTTCTCCCCAAAATTCTGAATGGAATGGTTATCAGCCTGAGTATTCATTATTTTGCTACTTGTCTTGATTCTTATGGGGTTGGTTTTTTGTATATTGGAGAATCAAGCAAGAAACCTAGTGCGCCTGTCTATTTATCTGAGAGGAGTATACATCCACTTTCATCATATGTCATGAACAACCCTGCTATTGAAAGAAATGTTTATGTGCACCTTAAAAAGCAGATGCCAGTTGACGAATTTCCAGAAAGGCCTAGTGAACCCGAATGCAGCTACTTCTTAAAAAGTGGGGATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAATAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACGCATTACAGCCGATATGGAATATGA 804 0.4055 MLEAETRESASNLYTSLEEKSTSGQNLATASGFLKNQDFDIFWGCKFNHTRGKCSSSTAPASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGDIINETAPFIANDTFARLQVFLPKILNGMVISLSIHYFATCLDSYGVGFLYIGESSKKPSAPVYLSERSIHPLSSYVMNNPAIERNVYVHLKKQMPVDEFPERPSEPECSYFLKSGDCKFKSNCKFHHPNNRVTRLPPCNLSDKGLPLRPDQNVCTHYSRYGI. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02790 267 ProSiteProfiles Zinc finger C3H1-type profile. 207 235 IPR000571 GO:0046872
Seca3g02790 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 98 IPR000571 GO:0046872
Seca3g02790 267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 233 IPR000571 GO:0046872
Seca3g02790 267 Gene3D - 160 243 - -
Seca3g02790 267 SMART c3hfinal6 72 99 IPR000571 GO:0046872
Seca3g02790 267 SMART c3hfinal6 207 234 IPR000571 GO:0046872
Seca3g02790 267 PANTHER PROTEIN PHOSPHATASE RELATED 44 267 - -
Seca3g02790 267 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Seca3g02790 267 SUPERFAMILY CCCH zinc finger 211 236 IPR036855 GO:0046872
Seca3g02790 267 Gene3D - 43 108 - -
Seca3g02790 267 SUPERFAMILY CCCH zinc finger 73 99 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02790 Seca-Chr3 50234424 50237731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02790 33 98 C2H2 Transcription Factor Family AT3G02830 42.424 8.26e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g02790 zf-CCCH 2.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02790 - - gmx:100809626 295.819