Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02784 ATGGAGCCCTCTGAATCCGAATCAATTGGTTCCTCCATCAAAGACCCACAATTGGGTTCTCAGGGTGAAACTTTTCCCCACCACGATCACGATCACGATCCTCAAGCCTCAGATCTCAATAACCATACCCTGGTTGATGATGCACTTGGCGGGGAGCTCCAGAACAAGTTGGATTTGAAAGATGGGGATGAAACTGAGAATAAAGTTTCAAACTTTGAAGCTGATGATGAACAGTTGTGTGGTGAAGCTGCTGCCCCAGAACCTGGCAGGGGCCAAGGGTGTGGTGATGATGATGGTTGGAATGGTGGTGATGAGAGCTGTAATTGGATAGAGAATGAGAATGTGAACGAGAGTGGGAGTGATAAGGTGGGTGGAGATGTTAATGAAGTGGATGGTGATGAAGTGGAGAACAAGGATGACAAAAGCAGTGTAAGAGCTCAACAGTACCCGTTGAGGCCCGATGCTGAGGACTGTGCATTTTATCTCAAGACTGGGACTTGCAAATATGGATTCAATTGCAAGTTTAATCACCCGGTTAGGCGAAAAAACCAGATGAAGGCTGTTAAAGAGAATGAAGGAGAAAGAGATGAACTGGAGGAAAAATTAGGCCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGTATTCAAGTTCAACAGCCCTGGCTTCAGAGCTTAACTTCCTCGGTCTACCTATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGTTGGAGTATGTGATTCCCCTTCAGGGTATGGTAATGGCAGTTCTATTCCATTACAAGGTGTATCACAATCATCTATACCCTCATGGTCTTCTACTAGGACATTAAATGAGACTGCTCCCTTTATGCCAATGATACTTTCGCCGACTCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCGCCTGTCTATTTATCTGAGAGGAGTATACATCCACCTTCATCATATGTCATGAACAACCCTGCTATCGAAAGAAATGTTTATATGCACCATAAAAAGCAGATGCCGGTTGACGAGTTTCCAGAAAGGCCCGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACACATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCGCCACCATCAACTAGCCCTGGACTTGATCAACAATCCTCCTACACAAACTCAGCTAGTGTTGAGGTGGATGGGATGGGTGGAAGTGGAGGTGCAAGTGATGTGACAATTCAGCAGCCTGTGTAA 1503 0.4464 MEPSESESIGSSIKDPQLGSQGETFPHHDHDHDPQASDLNNHTLVDDALGGELQNKLDLKDGDETENKVSNFEADDEQLCGEAAAPEPGRGQGCGDDDGWNGGDESCNWIENENVNESGSDKVGGDVNEVDGDEVENKDDKSSVRAQQYPLRPDAEDCAFYLKTGTCKYGFNCKFNHPVRRKNQMKAVKENEGERDELEEKLGQTECKYYLRSGGCKFGKACKFNHTRGKYSSSTALASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGVCDSPSGYGNGSSIPLQGVSQSSIPSWSSTRTLNETAPFMPMILSPTPGVSPQSSEWNGYQAPVYLSERSIHPPSSYVMNNPAIERNVYMHHKKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPPPSTSPGLDQQSSYTNSASVEVDGMGGSGGASDVTIQQPV. 501
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02784 500 Coils Coil 181 208 - -
Seca3g02784 500 Gene3D - 126 190 - -
Seca3g02784 500 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Seca3g02784 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 387 412 IPR000571 GO:0046872
Seca3g02784 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 178 IPR000571 GO:0046872
Seca3g02784 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 275 IPR000571 GO:0046872
Seca3g02784 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 457 IPR000571 GO:0046872
Seca3g02784 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 204 226 IPR000571 GO:0046872
Seca3g02784 500 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Seca3g02784 500 MobiDBLite consensus disorder prediction 1 145 - -
Seca3g02784 500 SUPERFAMILY CCCH zinc finger 153 180 IPR036855 GO:0046872
Seca3g02784 500 ProSiteProfiles Zinc finger C3H1-type profile. 152 180 IPR000571 GO:0046872
Seca3g02784 500 MobiDBLite consensus disorder prediction 465 482 - -
Seca3g02784 500 PANTHER PROTEIN PHOSPHATASE RELATED 30 466 - -
Seca3g02784 500 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Seca3g02784 500 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Seca3g02784 500 SMART c3hfinal6 201 228 IPR000571 GO:0046872
Seca3g02784 500 SMART c3hfinal6 431 458 IPR000571 GO:0046872
Seca3g02784 500 SMART c3hfinal6 152 179 IPR000571 GO:0046872
Seca3g02784 500 MobiDBLite consensus disorder prediction 1 19 - -
Seca3g02784 500 SUPERFAMILY CCCH zinc finger 204 231 IPR036855 GO:0046872
Seca3g02784 500 Gene3D - 431 479 - -
Seca3g02784 500 Gene3D - 199 285 - -
Seca3g02784 500 Gene3D - 363 424 - -
Seca3g02784 500 SUPERFAMILY CCCH zinc finger 390 414 IPR036855 GO:0046872
Seca3g02784 500 MobiDBLite consensus disorder prediction 124 145 - -
Seca3g02784 500 MobiDBLite consensus disorder prediction 107 121 - -
Seca3g02784 500 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Seca3g02784 500 MobiDBLite consensus disorder prediction 53 75 - -
Seca3g02784 500 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Seca3g02784 500 ProSiteProfiles Zinc finger C3H1-type profile. 431 459 IPR000571 GO:0046872
Seca3g02784 500 SUPERFAMILY CCCH zinc finger 429 457 IPR036855 GO:0046872
Seca3g02784 500 MobiDBLite consensus disorder prediction 457 500 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g02784 Seca-Chr3 50177593 50182298 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02784 381 474 C2H2 Transcription Factor Family AT3G02830 46.809 1.63e-20 91.7
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g02784 zf-CCCH 1.9e-08 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02784 - - gmx:100809906 668.692