Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g02784 | ATGGAGCCCTCTGAATCCGAATCAATTGGTTCCTCCATCAAAGACCCACAATTGGGTTCTCAGGGTGAAACTTTTCCCCACCACGATCACGATCACGATCCTCAAGCCTCAGATCTCAATAACCATACCCTGGTTGATGATGCACTTGGCGGGGAGCTCCAGAACAAGTTGGATTTGAAAGATGGGGATGAAACTGAGAATAAAGTTTCAAACTTTGAAGCTGATGATGAACAGTTGTGTGGTGAAGCTGCTGCCCCAGAACCTGGCAGGGGCCAAGGGTGTGGTGATGATGATGGTTGGAATGGTGGTGATGAGAGCTGTAATTGGATAGAGAATGAGAATGTGAACGAGAGTGGGAGTGATAAGGTGGGTGGAGATGTTAATGAAGTGGATGGTGATGAAGTGGAGAACAAGGATGACAAAAGCAGTGTAAGAGCTCAACAGTACCCGTTGAGGCCCGATGCTGAGGACTGTGCATTTTATCTCAAGACTGGGACTTGCAAATATGGATTCAATTGCAAGTTTAATCACCCGGTTAGGCGAAAAAACCAGATGAAGGCTGTTAAAGAGAATGAAGGAGAAAGAGATGAACTGGAGGAAAAATTAGGCCAGACAGAATGCAAGTATTATTTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGTATTCAAGTTCAACAGCCCTGGCTTCAGAGCTTAACTTCCTCGGTCTACCTATTCGTTTGGGAGAGAAAGAGTGCCCTTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAGCTGTTGGAGTATGTGATTCCCCTTCAGGGTATGGTAATGGCAGTTCTATTCCATTACAAGGTGTATCACAATCATCTATACCCTCATGGTCTTCTACTAGGACATTAAATGAGACTGCTCCCTTTATGCCAATGATACTTTCGCCGACTCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCGCCTGTCTATTTATCTGAGAGGAGTATACATCCACCTTCATCATATGTCATGAACAACCCTGCTATCGAAAGAAATGTTTATATGCACCATAAAAAGCAGATGCCGGTTGACGAGTTTCCAGAAAGGCCCGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTACAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAATGTGTGCACACATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCGCCACCATCAACTAGCCCTGGACTTGATCAACAATCCTCCTACACAAACTCAGCTAGTGTTGAGGTGGATGGGATGGGTGGAAGTGGAGGTGCAAGTGATGTGACAATTCAGCAGCCTGTGTAA | 1503 | 0.4464 | MEPSESESIGSSIKDPQLGSQGETFPHHDHDHDPQASDLNNHTLVDDALGGELQNKLDLKDGDETENKVSNFEADDEQLCGEAAAPEPGRGQGCGDDDGWNGGDESCNWIENENVNESGSDKVGGDVNEVDGDEVENKDDKSSVRAQQYPLRPDAEDCAFYLKTGTCKYGFNCKFNHPVRRKNQMKAVKENEGERDELEEKLGQTECKYYLRSGGCKFGKACKFNHTRGKYSSSTALASELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGVCDSPSGYGNGSSIPLQGVSQSSIPSWSSTRTLNETAPFMPMILSPTPGVSPQSSEWNGYQAPVYLSERSIHPPSSYVMNNPAIERNVYMHHKKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVTRLPPCNLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPPPSTSPGLDQQSSYTNSASVEVDGMGGSGGASDVTIQQPV. | 501 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g02784 | 500 | Coils | Coil | 181 | 208 | - | - | |
Seca3g02784 | 500 | Gene3D | - | 126 | 190 | - | - | |
Seca3g02784 | 500 | ProSiteProfiles | Zinc finger C3H1-type profile. | 249 | 277 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 387 | 412 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 156 | 178 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 252 | 275 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 434 | 457 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 204 | 226 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | SUPERFAMILY | CCCH zinc finger | 250 | 276 | IPR036855 | GO:0046872 | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 1 | 145 | - | - | |
Seca3g02784 | 500 | SUPERFAMILY | CCCH zinc finger | 153 | 180 | IPR036855 | GO:0046872 | |
Seca3g02784 | 500 | ProSiteProfiles | Zinc finger C3H1-type profile. | 152 | 180 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 465 | 482 | - | - | |
Seca3g02784 | 500 | PANTHER | PROTEIN PHOSPHATASE RELATED | 30 | 466 | - | - | |
Seca3g02784 | 500 | SMART | c3hfinal6 | 249 | 276 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | SMART | c3hfinal6 | 385 | 412 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | SMART | c3hfinal6 | 201 | 228 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | SMART | c3hfinal6 | 431 | 458 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | SMART | c3hfinal6 | 152 | 179 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Seca3g02784 | 500 | SUPERFAMILY | CCCH zinc finger | 204 | 231 | IPR036855 | GO:0046872 | |
Seca3g02784 | 500 | Gene3D | - | 431 | 479 | - | - | |
Seca3g02784 | 500 | Gene3D | - | 199 | 285 | - | - | |
Seca3g02784 | 500 | Gene3D | - | 363 | 424 | - | - | |
Seca3g02784 | 500 | SUPERFAMILY | CCCH zinc finger | 390 | 414 | IPR036855 | GO:0046872 | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 124 | 145 | - | - | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 107 | 121 | - | - | |
Seca3g02784 | 500 | ProSiteProfiles | Zinc finger C3H1-type profile. | 385 | 413 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 53 | 75 | - | - | |
Seca3g02784 | 500 | ProSiteProfiles | Zinc finger C3H1-type profile. | 201 | 229 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | ProSiteProfiles | Zinc finger C3H1-type profile. | 431 | 459 | IPR000571 | GO:0046872 | |
Seca3g02784 | 500 | SUPERFAMILY | CCCH zinc finger | 429 | 457 | IPR036855 | GO:0046872 | |
Seca3g02784 | 500 | MobiDBLite | consensus disorder prediction | 457 | 500 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g02784 | Seca-Chr3 | 50177593 | 50182298 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g02784 | 381 | 474 | C2H2 Transcription Factor Family | AT3G02830 | 46.809 | 1.63e-20 | 91.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca3g02784 | zf-CCCH | 1.9e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g02784 | - | - | gmx:100809906 | 668.692 |