Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02777 ATGGAGATGGATCACAAGCAACAAGTTTGTATGGCGTGCACTCAGAACTGTCTATTGTTCCACTCATCAGCGAAAACCTCAAATACCTCTTTCTTCAAGGTCATCACTCATCAAAATGATTTCATGATTATGTATATTCCTCCTAAGTTTAGTCGTACTGTGTCAGTCATGGTTGATAAGGAAATCATTCTCAAGGATTCAAGTGGGCAGCGATGGCCTGTAAAAGTATCACGTGATGATGATTCTTTTGTTTTTAAGGAAGGATGGAATTCTTTTGCATTGGATCATGGACTTGAAATTGGAGAACTTCTGATATTTAATTGCATTAACAGATTGCATTTTGATGTCAAGATCTATGGTATATCTTCGTGTGAAAGGCTTGATTTTTCTAAAAAAATAAATCAGAAAAAAAGAAGTAGAGGCAGAAGTGGCTCTCCCAATAGAGATGGTATGTTGGTCAGACAAGGTCCAAATGCCTCACTTGTCTCCGAGCCTGATGTGCGAAAAATGAATACCCAGCACAGGGAGGTTGATTTAGGAGGAACACTGAATAGTATGGAGAATATTTCAAAAAATGATAATAACAATGGAAGTGCCCAAGCTATGTACATGTCAGAACACTGTGAAGATCTATGTTACATGGCAAGCCTAGAATTTGAAGACGAAGAAAGAGATAACAACACCTGTGGTCTTGATGGGACTATGAAAATTACAGCTGGAGATTCAAAAGTTTCGCATATTAATCATGGATCCCATATGTATCAGACTAATGCAACCTTATGTAACAAAGATTCCATGTTTAAAGGGATATTGGGCACAGGAGCTGCCTCAGATGCATCTGATCTTGAAATGTCTGGAAGAAATAATTCTCTTAGTGAGACAGACAAGAGCGCATATGACAAGACTTCTACTTTGAAAATTGAAGAAAACAGAGAGAACAAATCCATTATGTCTGACCAGGAAGTTCAAGTGTGCCAATTTACCGAGGGCTTAGGTACTACAGTTAATAGAGTAACTTTGTTTCATTTCCAGAGACCTGAATTTGTTAATTGA 1053 0.378 MEMDHKQQVCMACTQNCLLFHSSAKTSNTSFFKVITHQNDFMIMYIPPKFSRTVSVMVDKEIILKDSSGQRWPVKVSRDDDSFVFKEGWNSFALDHGLEIGELLIFNCINRLHFDVKIYGISSCERLDFSKKINQKKRSRGRSGSPNRDGMLVRQGPNASLVSEPDVRKMNTQHREVDLGGTLNSMENISKNDNNNGSAQAMYMSEHCEDLCYMASLEFEDEERDNNTCGLDGTMKITAGDSKVSHINHGSHMYQTNATLCNKDSMFKGILGTGAASDASDLEMSGRNNSLSETDKSAYDKTSTLKIEENRENKSIMSDQEVQVCQFTEGLGTTVNRVTLFHFQRPEFVN. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02777 350 PANTHER B3 DOMAIN-CONTAINING 23 193 - -
Seca3g02777 350 MobiDBLite consensus disorder prediction 178 198 - -
Seca3g02777 350 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Seca3g02777 350 MobiDBLite consensus disorder prediction 282 297 - -
Seca3g02777 350 SMART B3_2 31 122 IPR003340 GO:0003677
Seca3g02777 350 MobiDBLite consensus disorder prediction 135 159 - -
Seca3g02777 350 MobiDBLite consensus disorder prediction 278 297 - -
Seca3g02777 350 SUPERFAMILY DNA-binding pseudobarrel domain 25 124 IPR015300 -
Seca3g02777 350 CDD B3_DNA 30 119 IPR003340 GO:0003677
Seca3g02777 350 Gene3D - 22 124 IPR015300 -
Seca3g02777 350 Pfam B3 DNA binding domain 31 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02777 Seca-Chr3 50052271 50056285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02777 46 125 B3 DNA Binding Superfamily AT3G18960 31.250 2.69e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g02777 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02777 - - ccaj:109789322 328.176