Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02746 ATGGCTGCTTTTACTTCTTTCTCCCTCTCTCCTTACACTCCCTATCTCCGCCCAAAACCAACCAGGCTTTCCGTTTCAGTTTCCGCGCTCCCAGGCACTGATGGAGCTAATTCTAAAGCACCGCGCAGAAGAACGAGAAGAATAGAAGGTCCTCGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCCGATGGACCACCCTTACGCGTTCTCCCTATTGGTGGTTTGGGTGAAATTGGAATGAATTGCATGCTTGTAGGAAACTATGACCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTACAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACATGGTCATGAGGATCATATCGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGGAGCATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACTAGGAAGAAGTTTCTGGCTGGGCCATTTGAGATAGAACCTATCACGGTGACCCATTCCATTCCTGATTGTTGCGGACTTGTTCTTCGCTGCTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTGGATGGGAAAGTTTTTGATCGTGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACACTGATGATGAGTGATTCAACAAATGTACTCTCTCCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCACTATTGAGGCACATTTCAGCTTCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATAGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCATTTGATCCATCCACGCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCTTTGAATCTTGCATCTTATGGAAGTAGTCACGCTTTCAAACTAACCAAGGATGATATTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAAATTGGATCAACAATAGTTATGGGGAAAAATGAAGGTTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTCCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCCGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGTGACAAAGCATTCGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGATTAGTATGGAAATCTTTCGCCCTACAAATTTAGACAGTTTGGCTGAAAACACCATAAAAGGGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGATGGATGCACTATATAAAGCCGCCCATGCCACTCTTTTAAGCTGTCCTGTTAACAGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTGTAGAAAACCCTGCAGCTGTTCTTGGTAATGAGATAAACACAAAATTGTCCGGCAAATCCGATGTGGCTCCTGTAATATCAACATTAAGAAAAGCAGTGGATGGACATGGAAAGGAAAATCAGTCCACCACACTGCACAGTAGAGGTAACATCAATGTACATTTGAGGAATACATATAGAACTGTGGAGATCTGGTTGGTTCGAATTTGTGCATATGATGGAATTAATATTCAAGGATTACCTGAGGAAGACACCACTTTAAGTGGAGCTGAGGGTGATTTATCTGATTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCATCATCTGTTGAGAAGTCAATCAAAGCTAACAATGGTCATGTTTCACGAAAGGAGCATAAGTCCAATCTAAAGAAAGATGATTCTGAAGACACCAGTGAAGCCAAGTCTGGAGAAATGCCTGATTCCAATCATCCGTCTTCAAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTAGTATGCGGGGGGAACTACATGACAGATTTCAAGTTGTTAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAAAACTTGTTGGCTGATGGGATTAACAGAAGTCCTGGACAGTGCAAATCTCTTTGGACATCTTTGGTACTGAAATATGAGGAGATCAAGAATGAGAAGGGAAGCAAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGCATAATGCCCAATGAGGAAACACCGGCAACAAAGTGA 2640 0.4155 MAAFTSFSLSPYTPYLRPKPTRLSVSVSALPGTDGANSKAPRRRTRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMEEHGIFVPSRLKVFRTRKKFLAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKDDIVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLKIALDGIIVISMEIFRPTNLDSLAENTIKGKIRITTRCLWLDKGKLMDALYKAAHATLLSCPVNSPLAHMERTVSEVLRKMVRKYSGKRPEVIAIAVENPAAVLGNEINTKLSGKSDVAPVISTLRKAVDGHGKENQSTTLHSRGNINVHLRNTYRTVEIWLVRICAYDGINIQGLPEEDTTLSGAEGDLSDSEDSDEFWKPFIASSVEKSIKANNGHVSRKEHKSNLKKDDSEDTSEAKSGEMPDSNHPSSKSVKKNKWKAEEVKKLISMRGELHDRFQVVKGRMALWEEISQNLLADGINRSPGQCKSLWTSLVLKYEEIKNEKGSKKSWQYLEDMESIMPNEETPATK. 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02746 879 Pfam Metallo-beta-lactamase superfamily 89 226 IPR001279 -
Seca3g02746 879 CDD RNaseJ_MBL-fold 78 482 - -
Seca3g02746 879 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 482 IPR036866 -
Seca3g02746 879 MobiDBLite consensus disorder prediction 39 59 - -
Seca3g02746 879 PANTHER RIBONUCLEASE J 1 879 - -
Seca3g02746 879 Gene3D - 79 484 IPR036866 -
Seca3g02746 879 MobiDBLite consensus disorder prediction 743 770 - -
Seca3g02746 879 CDD GT1 786 851 - -
Seca3g02746 879 Gene3D - 788 849 - -
Seca3g02746 879 ProSiteProfiles Myb-like domain profile. 780 844 IPR001005 -
Seca3g02746 879 MobiDBLite consensus disorder prediction 742 787 - -
Seca3g02746 879 MobiDBLite consensus disorder prediction 26 59 - -
Seca3g02746 879 Gene3D - 269 419 IPR042173 -
Seca3g02746 879 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 425 462 IPR011108 -
Seca3g02746 879 Pfam Myb/SANT-like DNA-binding domain 786 869 IPR044822 -
Seca3g02746 879 SMART Lactamase_B_5a 87 277 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02746 Seca-Chr3 49558128 49568212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02746 787 870 Trihelix Transcription Factor Family AT2G38250 34.884 3.34e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g02746 Lactamase_B 4.1e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02746 - - gmx:100783850 1423.3