Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02743 ATGGGTTGCAGCAGCTCATACGGACCATTTAGGGCTCAGAGGGAACTGGGTCAAAATGGGTCAGAAACTGTTTTGAGCCGTTGTGGGATGGAATGTGAAGGACTTGAGACCTTGTGTATTAAGGACCAGACACTTACAAATGAAAATGTAGAGAAAATAGTTGGTTGGGCTTTAAGCCACCATCTCATGCAGAATTCTGAAGTTGATCCTGATGTTAAGCTTGTCTTGTCTAGTGAGAGCATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAGAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACGGAAAACGAGTTTGAAAAGAGACTCTTGGCTGATGTTATTCCACCTAGCGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTGCAGAGGCCTGAGCTTTTCTGCAAGGGGCAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAGTTGCCACTGAAGCCGGTGCGAATTTCATTAACATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTGAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCTAGTGTGATATTTGTTGATGAGGTGGATAGCATGTTGGGCCGGAGGGAAAATCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAGTTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAGCGAGTTCTTGTACTTGCTGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATACGGAGGCTTCCTCGAAGATTAATGGTAAATTTGCCAGATGCTCCAAATAGAGAAAAAATATTGAAAGTTATACTGGCAAAAGAGGACCTGTCTTCTGATATTGATCTGGGTGCAATTGCAAATATGACTGATGGATATTCAGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGACCGATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACATGCTGCTGCGCTAGTGGAAGGAAGGCCTGCTCCAGCCTTGAGAGGAAGTGCAGATATCCGATCTTTAAACATGGAAGACTTCAAATGTGCTCATCAACAGGTATGTGCAAGTGTCTCCTCTGAATCCGTAAACATGACTGAGCTTGTGCAATGGAATGAACTATATGGTGAAGGTGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 1299 0.4296 MGCSSSYGPFRAQRELGQNGSETVLSRCGMECEGLETLCIKDQTLTNENVEKIVGWALSHHLMQNSEVDPDVKLVLSSESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILKVILAKEDLSSDIDLGAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEHAAALVEGRPAPALRGSADIRSLNMEDFKCAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02743 432 Gene3D - 300 394 - -
Seca3g02743 432 Pfam AAA+ lid domain 321 359 IPR041569 -
Seca3g02743 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 406 IPR027417 -
Seca3g02743 432 Gene3D - 126 407 IPR027417 -
Seca3g02743 432 SMART AAA_5 164 301 IPR003593 GO:0016887
Seca3g02743 432 Coils Coil 88 108 - -
Seca3g02743 432 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Seca3g02743 432 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 126 302 - -
Seca3g02743 432 ProSitePatterns AAA-protein family signature. 271 290 IPR003960 GO:0005524|GO:0016887
Seca3g02743 432 CDD RecA-like_ATAD1 131 297 - -
Seca3g02743 432 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 21 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02743 Seca-Chr3 49530594 49535217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02743 127 359 Calmodulin-binding Proteins AT3G56690 42.616 5.60e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02743 - - gmx:100780098 736.873