Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02719 ATGTCCACCTCTTACCCTTACTCTCCACCACCCACCCCTTACCTCACCAATCTCGGCTTTGGCTATTCCATCGCCATCGCCCTCGGCTTCCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACTATCCGCAACCGCCGCAACAACCACGCCCAATCAGACGGCGTCGTTTTGCCGCGCATAATCTTCGTGGCGGAAGACGAGGAGGAACGGCAGCAAGACGGCGTCGTATTGGGACTTGACCAGAACGTGATCAACTCGTACCCGAGATTCCAGTACGCGAAGGATGTGGGACAGGACAGCACGTGCTCGATCTGTTTGTGCGAGTACAAGGAGTCGGAGATGCTGAGGATGATGCCCGAATGTCGTCACTACTTTCACCTCTGTTGCCTTGACTCATGGTTGAAGCTCAATGGCTCATGCCCTGTTTGCCGTAATTCGCCTTTGCCGACGCCCATTTCTACGCCGTTGCAAGAAGTGGTGCCGCTCTCTCACTATCCCGCTGATAGAAGGGCTAGTAGGTGA 540 0.5593 MSTSYPYSPPPTPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTIRNRRNNHAQSDGVVLPRIIFVAEDEEERQQDGVVLGLDQNVINSYPRFQYAKDVGQDSTCSICLCEYKESEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPISTPLQEVVPLSHYPADRRASR. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02719 179 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Seca3g02719 179 Pfam Ring finger domain 107 150 IPR001841 -
Seca3g02719 179 SMART ring_2 108 149 IPR001841 -
Seca3g02719 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 154 IPR013083 -
Seca3g02719 179 PANTHER RING-H2 FINGER PROTEIN ATL67 12 177 IPR044289 GO:0016567|GO:0016740
Seca3g02719 179 SUPERFAMILY RING/U-box 91 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02719 Seca-Chr3 49103607 49104146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02719 14 172 C3H Transcription Factor Family AT5G06490 38.122 1.06e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02719 - - vra:106773185 271.552